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TEX264
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:46.5 nTPM
HPA:46.5 nTPM
GTEx:41.8 nTPM
FANTOM5:25.4 Scaled Tags Per Million
Pig:11.2 nTPM
Mouse:80.8 nTPM
Allen mouse:4.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA017739Antibody CAB005002
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 46.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.8
1857 Female, age 85, left hemisphere 46.9
2481 Female, age 94, left hemisphere 46.1
2289 Male, age 61, right hemisphere 45.5
2288 Male, age 75, left hemisphere 45.3
2846 Female, age 79, unknown 44.9
1854 Male, age 80, left hemisphere 43.9
2290 Female, age 72, unknown 43.1
1781 Male, age 74, unknown 42.6
Claustrum
nTPM: 42.8
2392 Female, age 94, both hemispheres 43.7
2491 Male, age 75, both hemispheres 43.4
2568 Male, age 61, both hemispheres 43.3
1956 Male, age 74, unknown 43.0
2292 Female, age 85, both hemispheres 42.9
2198 Male, age 80, both hemispheres 42.8
2196 Female, age 79, unknown 42.5
2284 Female, age 91, both hemispheres 42.3
2645 Female, age 72, unknown 41.3
Globus pallidus, externus
nTPM: 46.1
1996 Male, age 80, right hemisphere 48.9
2772 Female, age 79, unknown 48.6
2395 Male, age 75, both hemispheres 47.1
2646 Male, age 61, right hemisphere 45.3
2567 Female, age 72, unknown 40.5
Globus pallidus, internus
nTPM: 46.5
2287 Male, age 75, right hemisphere 49.4
2037 Male, age 80, right hemisphere 47.9
1818 Male, age 74, unknown 47.1
2483 Female, age 94, right hemisphere 47.1
2778 Female, age 91, both hemispheres 47.1
2111 Female, age 85, right hemisphere 45.1
2566 Female, age 72, unknown 42.1
Nucleus accumbens
nTPM: 43.6
2286 Male, age 75, left hemisphere 45.7
1806 Female, age 85, left hemisphere 44.6
1783 Male, age 74, unknown 44.0
2732 Male, age 80, right hemisphere 43.8
1856 Female, age 91, right hemisphere 43.3
2824 Male, age 61, right hemisphere 42.6
2391 Female, age 94, left hemisphere 42.3
2698 Female, age 72, unknown 42.3
Nucleus basalis of Meynert
nTPM: 43.9
2569 Male, age 61, both hemispheres 47.3
2484 Female, age 94, left hemisphere 44.1
2393 Male, age 80, right hemisphere 42.4
2821 Male, age 75, both hemispheres 41.9
Nucleus of the diagonal band
nTPM: 42.7
2775 Male, age 80, right hemisphere 44.0
1812 Female, age 91, both hemispheres 43.3
2029 Male, age 61, right hemisphere 42.9
1979 Male, age 74, unknown 42.4
2195 Female, age 85, both hemispheres 41.0
Olfactory tubercle
nTPM: 42.1
1846 Male, age 80, right hemisphere 43.4
1998 Female, age 91, both hemispheres 42.1
2856 Male, age 75, right hemisphere 41.5
2487 Female, age 94, left hemisphere 41.3
Putamen
nTPM: 43.3
2466 Female, age 79, unknown 45.2
2482 Female, age 94, left hemisphere 45.1
1838 Male, age 80, right hemisphere 43.6
1937 Female, age 91, right hemisphere 42.8
2489 Female, age 72, unknown 42.8
1829 Male, age 74, unknown 42.5
2647 Male, age 75, left hemisphere 41.2
Septal nuclei
nTPM: 42.9
1960 Male, age 74, unknown 45.2
2059 Female, age 85, both hemispheres 43.5
2031 Female, age 72, unknown 43.4
2394 Male, age 61, left hemisphere 43.0
2009 Female, age 91, both hemispheres 42.9
2199 Male, age 80, right hemisphere 41.2
2629 Female, age 94, right hemisphere 41.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 41.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.9
Samples: 246

Max nTPM: 56.7
Min nTPM: 17.0
Std nTPM: 6.8
Median nTPM: 35.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 56.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 55.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 54.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 53.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 53.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 53.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 52.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 52.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 51.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 51.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 50.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.7
Samples: 246

Max nTPM: 69.0
Min nTPM: 18.1
Std nTPM: 7.6
Median nTPM: 33.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 69.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 62.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 62.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 58.2
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 55.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 55.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 51.7
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 51.4
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 50.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 50.0
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 49.1
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Brain - Putamen (basal ganglia)
Average nTPM: 41.8
Samples: 205

Max nTPM: 64.4
Min nTPM: 24.5
Std nTPM: 7.7
Median nTPM: 40.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 64.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 63.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 63.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 60.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 59.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 59.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 59.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 57.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 57.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 57.6
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 56.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.3
FF:10164-103B2 76 years, female 19.3
Globus pallidus
Scaled Tags Per Million: 24.7
FF:10175-103C4 60 years, female 30.7
FF:10161-103A8 76 years, female 18.7
Nucleus accumbens
Scaled Tags Per Million: 25.4
FF:10037-101F1 23-56 years, mixed 25.4
Putamen
Scaled Tags Per Million: 17.7
FF:10176-103C5 60 years, female 17.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.2
Pig sample Sample description nTPM
Caudate
nTPM: 10.6
Samples: 4

Max nTPM: 12.5
Min nTPM: 8.6
Sample A Female 9.8
Sample B Female 11.6
Sample C Male 12.5
Sample D Male 8.6
Putamen
nTPM: 11.2
Samples: 4

Max nTPM: 12.8
Min nTPM: 7.8
Sample A Female 12.0
Sample B Female 7.8
Sample C Male 12.2
Sample D Male 12.8
Septum
nTPM: 10.6
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.5
Sample A Female 11.6
Sample B Female 9.5
Sample C Male 9.9
Sample D Male 11.3
Ventral pallidum
nTPM: 10.4
Samples: 4

Max nTPM: 11.7
Min nTPM: 8.1
Sample A Female 8.1
Sample B Female 10.8
Sample C Male 11.7
Sample D Male 11.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 80.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 76.7
Samples: 4

Max nTPM: 81.9
Min nTPM: 67.3
Sample A Male 79.5
Sample B Male 81.9
Sample C Female 67.3
Sample D Female 78.1
Septum
nTPM: 72.5
Samples: 4

Max nTPM: 74.9
Min nTPM: 68.5
Sample A Male 73.7
Sample B Male 72.8
Sample C Female 74.9
Sample D Female 68.5
Ventral forebrain
nTPM: 80.8
Samples: 4

Max nTPM: 91.2
Min nTPM: 74.1
Sample A Male 78.7
Sample B Male 74.1
Sample C Female 91.2
Sample D Female 79.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.4
77620381 Antisense, RP_070205_01_E02, Mouse strain C57BL/6J (56 days, male) 4.4
Pallidum
Expression energy: 3.5
77620381 Antisense, RP_070205_01_E02, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.