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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:195.7 nTPM
HPA:195.7 nTPM
GTEx:196.6 nTPM
FANTOM5:198.3 Scaled Tags Per Million
Pig:453.6 nTPM
Mouse:423.2 nTPM
Allen mouse:13.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 195.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 128.8
1827 Male, age 72, unknown 201.4
2828 Female, age 72, unknown 161.0
2019 Male, age 18, unknown 154.9
2666 Male, age 74, left hemisphere 154.9
2411 Female, age 72, unknown 122.7
2219 Male, age 76, both hemispheres 114.8
1870 Female, age 42, unknown 110.0
2586 Male, age 75, left hemisphere 102.9
1833 Male, age 53, unknown 83.1
1830 Male, age 51, unknown 81.8
Dorsal raphe nucleus
nTPM: 117.1
2298 Female, age 72, unknown 185.0
2750 Male, age 76, both hemispheres 127.8
2047 Male, age 72, unknown 114.8
1828 Male, age 53, unknown 95.8
2016 Female, age 72, unknown 62.2
Inferior colliculus
nTPM: 92.7
2097 Female, age 72, unknown 134.2
1890 Male, age 53, unknown 86.7
1848 Female, age 42, unknown 83.0
2849 Male, age 72, unknown 67.0
Median raphe nucleus
nTPM: 149.4
2220 Male, age 76, midline 149.4
Pedunculopontine tegmental nucleus
nTPM: 125.5
2334 Male, age 80, both hemispheres 147.0
1921 Female, age 85, both hemispheres 116.6
2338 Male, age 61, both hemispheres 112.8
Periaquaductal grey, anterior
nTPM: 173.2
1795 Male, age 51, unknown 213.0
1947 Male, age 18, unknown 174.5
2502 Female, age 75, unknown 132.0
Periaquaductal grey, dorsal
nTPM: 104.8
1831 Male, age 72, unknown 134.6
2850 Male, age 76, both hemispheres 102.9
1840 Male, age 53, unknown 97.6
2464 Female, age 72, unknown 84.1
Periaquaductal grey, lateral
nTPM: 108.7
2272 Male, age 74, both hemispheres 123.7
2053 Male, age 18, unknown 119.2
2140 Male, age 76, both hemispheres 83.1
Pretectal area
nTPM: 195.7
1816 Male, age 51, unknown 344.3
1944 Female, age 72, unknown 297.7
1817 Female, age 42, unknown 263.3
2007 Male, age 72, unknown 250.2
1815 Male, age 53, unknown 247.9
2667 Female, age 75, unknown 159.1
2224 Female, age 72, unknown 139.7
2407 Male, age 75, both hemispheres 125.8
2273 Male, age 74, both hemispheres 123.7
2825 Male, age 18, unknown 110.9
2316 Male, age 76, right hemisphere 90.0
Red nucleus
nTPM: 95.8
2785 Male, age 18, unknown 148.2
2725 Female, age 75, unknown 136.9
2584 Male, age 75, left hemisphere 110.1
1821 Female, age 72, unknown 103.8
2588 Male, age 74, left hemisphere 98.9
2503 Female, age 72, unknown 92.9
1865 Male, age 51, unknown 87.1
1954 Female, age 42, unknown 87.0
1904 Male, age 53, unknown 82.9
2823 Male, age 76, right hemisphere 77.1
2769 Male, age 72, unknown 63.3
2227 Male, age 72, unknown 61.7
Substantia nigra
nTPM: 154.9
1889 Female, age 72, unknown 219.5
1916 Female, age 42, unknown 207.6
1941 Male, age 53, unknown 179.2
1851 Male, age 51, unknown 166.6
2241 Male, age 72, unknown 150.2
2409 Female, age 72, unknown 147.0
2590 Female, age 75, unknown 139.7
2583 Male, age 75, right hemisphere 129.3
2665 Male, age 74, both hemispheres 124.1
2699 Male, age 18, unknown 85.6
Superior colliculus
nTPM: 150.9
2087 Female, age 72, unknown 223.1
1796 Male, age 53, unknown 209.2
2261 Male, age 18, unknown 187.7
2668 Female, age 75, unknown 164.5
1913 Female, age 42, unknown 147.4
2587 Male, age 74, left hemisphere 144.1
1995 Male, age 72, unknown 122.6
1895 Male, age 76, right hemisphere 108.2
2664 Male, age 75, both hemispheres 104.6
1839 Male, age 51, unknown 97.0
Ventral tegmental area
nTPM: 134.5
2218 Male, age 76, both hemispheres 153.3
2410 Female, age 72, unknown 150.3
1915 Female, age 42, unknown 142.6
2223 Female, age 72, unknown 140.2
2021 Male, age 53, unknown 112.3
1942 Male, age 51, unknown 108.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 196.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 196.6
Samples: 139

Max nTPM: 475.1
Min nTPM: 120.8
Std nTPM: 62.9
Median nTPM: 180.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 475.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 463.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 438.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 410.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 359.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 357.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 292.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 292.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 289.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 288.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 276.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 198.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 198.3
FF:10158-103A5 76 years, female 198.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 453.6
Pig sample Sample description nTPM
Midbrain
nTPM: 446.9
Samples: 4

Max nTPM: 791.9
Min nTPM: 269.1
Sample A Female 340.2
Sample B Female 269.1
Sample C Male 791.9
Sample D Male 386.5
Periaqueductal gray
nTPM: 260.0
Samples: 3

Max nTPM: 318.2
Min nTPM: 216.2
Sample B Female 245.7
Sample C Male 318.2
Sample D Male 216.2
Substantia nigra
nTPM: 282.9
Samples: 4

Max nTPM: 374.1
Min nTPM: 176.8
Sample A Female 374.1
Sample B Female 257.4
Sample C Male 323.1
Sample D Male 176.8
Superior colliculi
nTPM: 453.6
Samples: 4

Max nTPM: 716.6
Min nTPM: 341.1
Sample A Female 380.1
Sample B Female 341.1
Sample C Male 716.6
Sample D Male 376.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 423.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 423.2
Samples: 4

Max nTPM: 443.9
Min nTPM: 407.9
Sample A Male 407.9
Sample B Male 426.8
Sample C Female 443.9
Sample D Female 414.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.3
1133 Antisense, RP_Baylor_103130, Mouse strain C57BL/6J (56 days, male) 13.3
1134 Antisense, RP_Baylor_103130, Mouse strain C57BL/6J (56 days, male) 9.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.