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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:237.4 nTPM
HPA:237.4 nTPM
GTEx:276.3 nTPM
FANTOM5:332.1 Scaled Tags Per Million
Pig:138.1 nTPM
Mouse:153.6 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 237.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 226.0
2586 Male, age 75, left hemisphere 391.0
2828 Female, age 72, unknown 252.0
2666 Male, age 74, left hemisphere 234.6
1827 Male, age 72, unknown 210.0
1870 Female, age 42, unknown 208.9
1833 Male, age 53, unknown 202.2
1830 Male, age 51, unknown 198.6
2411 Female, age 72, unknown 194.7
2219 Male, age 76, both hemispheres 188.0
2019 Male, age 18, unknown 180.4
Dorsal raphe nucleus
nTPM: 235.0
2016 Female, age 72, unknown 258.6
2047 Male, age 72, unknown 255.3
1828 Male, age 53, unknown 241.5
2750 Male, age 76, both hemispheres 214.5
2298 Female, age 72, unknown 205.2
Inferior colliculus
nTPM: 233.6
1848 Female, age 42, unknown 243.7
2849 Male, age 72, unknown 237.0
1890 Male, age 53, unknown 228.3
2097 Female, age 72, unknown 225.4
Median raphe nucleus
nTPM: 216.0
2220 Male, age 76, midline 216.0
Pedunculopontine tegmental nucleus
nTPM: 194.1
2334 Male, age 80, both hemispheres 206.5
1921 Female, age 85, both hemispheres 201.2
2338 Male, age 61, both hemispheres 174.7
Periaquaductal grey, anterior
nTPM: 229.9
2502 Female, age 75, unknown 242.7
1795 Male, age 51, unknown 228.4
1947 Male, age 18, unknown 218.4
Periaquaductal grey, dorsal
nTPM: 230.4
1840 Male, age 53, unknown 258.6
2464 Female, age 72, unknown 230.3
2850 Male, age 76, both hemispheres 229.6
1831 Male, age 72, unknown 203.1
Periaquaductal grey, lateral
nTPM: 226.2
2053 Male, age 18, unknown 253.4
2140 Male, age 76, both hemispheres 231.9
2272 Male, age 74, both hemispheres 193.3
Pretectal area
nTPM: 216.5
1817 Female, age 42, unknown 252.3
2825 Male, age 18, unknown 243.0
1944 Female, age 72, unknown 242.7
1816 Male, age 51, unknown 229.2
2316 Male, age 76, right hemisphere 213.5
1815 Male, age 53, unknown 213.3
2007 Male, age 72, unknown 211.2
2667 Female, age 75, unknown 203.1
2407 Male, age 75, both hemispheres 194.6
2224 Female, age 72, unknown 194.4
2273 Male, age 74, both hemispheres 184.5
Red nucleus
nTPM: 237.4
2503 Female, age 72, unknown 265.7
2227 Male, age 72, unknown 256.5
2588 Male, age 74, left hemisphere 256.4
2769 Male, age 72, unknown 251.8
1954 Female, age 42, unknown 240.5
2725 Female, age 75, unknown 237.1
2584 Male, age 75, left hemisphere 235.5
2823 Male, age 76, right hemisphere 234.6
1821 Female, age 72, unknown 233.8
1865 Male, age 51, unknown 226.5
1904 Male, age 53, unknown 215.6
2785 Male, age 18, unknown 194.4
Substantia nigra
nTPM: 229.0
2699 Male, age 18, unknown 268.5
2583 Male, age 75, right hemisphere 253.4
1941 Male, age 53, unknown 238.9
1916 Female, age 42, unknown 233.5
1889 Female, age 72, unknown 228.2
2241 Male, age 72, unknown 219.8
1851 Male, age 51, unknown 216.9
2665 Male, age 74, both hemispheres 216.0
2590 Female, age 75, unknown 208.3
2409 Female, age 72, unknown 206.4
Superior colliculus
nTPM: 217.1
2668 Female, age 75, unknown 237.1
2261 Male, age 18, unknown 229.7
2664 Male, age 75, both hemispheres 229.0
2087 Female, age 72, unknown 227.5
1796 Male, age 53, unknown 221.2
1839 Male, age 51, unknown 213.9
1995 Male, age 72, unknown 210.9
2587 Male, age 74, left hemisphere 203.7
1913 Female, age 42, unknown 201.6
1895 Male, age 76, right hemisphere 196.0
Ventral tegmental area
nTPM: 218.8
1942 Male, age 51, unknown 250.5
2218 Male, age 76, both hemispheres 222.8
1915 Female, age 42, unknown 214.9
2021 Male, age 53, unknown 213.1
2410 Female, age 72, unknown 208.7
2223 Female, age 72, unknown 202.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 276.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 276.3
Samples: 139

Max nTPM: 623.2
Min nTPM: 49.1
Std nTPM: 106.0
Median nTPM: 264.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 623.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 508.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 506.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 492.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 472.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 468.2
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 463.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 462.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 450.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 450.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 450.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 332.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 332.1
FF:10158-103A5 76 years, female 332.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 138.1
Pig sample Sample description nTPM
Midbrain
nTPM: 138.1
Samples: 4

Max nTPM: 174.5
Min nTPM: 105.1
Sample A Female 174.5
Sample B Female 148.7
Sample C Male 124.2
Sample D Male 105.1
Periaqueductal gray
nTPM: 133.7
Samples: 3

Max nTPM: 152.3
Min nTPM: 121.9
Sample B Female 152.3
Sample C Male 121.9
Sample D Male 126.9
Substantia nigra
nTPM: 129.1
Samples: 4

Max nTPM: 152.9
Min nTPM: 116.2
Sample A Female 152.9
Sample B Female 116.2
Sample C Male 117.0
Sample D Male 130.1
Superior colliculi
nTPM: 111.0
Samples: 4

Max nTPM: 137.2
Min nTPM: 67.4
Sample A Female 137.2
Sample B Female 67.4
Sample C Male 113.4
Sample D Male 125.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 153.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 153.6
Samples: 4

Max nTPM: 159.9
Min nTPM: 147.1
Sample A Male 159.9
Sample B Male 155.5
Sample C Female 147.1
Sample D Female 151.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69528040 Antisense, RP_050421_03_A03, Mouse strain C57BL/6J (56 days, male) 1.3
73520964 Antisense, RP_051017_04_E04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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