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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:38.1 nTPM
HPA:38.1 nTPM
GTEx:22.7 nTPM
FANTOM5:144.5 Scaled Tags Per Million
Pig:36.7 nTPM
Mouse:25.1 nTPM
Allen mouse:6.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA043949Antibody CAB015942
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.8
2846 Female, age 79, unknown 40.9
1857 Female, age 85, left hemisphere 39.5
2290 Female, age 72, unknown 38.8
2481 Female, age 94, left hemisphere 37.6
2288 Male, age 75, left hemisphere 36.3
1854 Male, age 80, left hemisphere 36.1
2289 Male, age 61, right hemisphere 33.2
1781 Male, age 74, unknown 31.7
Claustrum
nTPM: 31.7
1956 Male, age 74, unknown 36.0
2196 Female, age 79, unknown 34.3
2392 Female, age 94, both hemispheres 33.8
2198 Male, age 80, both hemispheres 31.7
2491 Male, age 75, both hemispheres 31.7
2292 Female, age 85, both hemispheres 31.2
2284 Female, age 91, both hemispheres 29.8
2568 Male, age 61, both hemispheres 28.5
2645 Female, age 72, unknown 28.3
Globus pallidus, externus
nTPM: 36.5
2395 Male, age 75, both hemispheres 38.8
2772 Female, age 79, unknown 37.1
1996 Male, age 80, right hemisphere 36.3
2646 Male, age 61, right hemisphere 35.9
2567 Female, age 72, unknown 34.2
Globus pallidus, internus
nTPM: 37.7
2287 Male, age 75, right hemisphere 44.2
2778 Female, age 91, both hemispheres 40.3
2483 Female, age 94, right hemisphere 38.9
1818 Male, age 74, unknown 36.1
2037 Male, age 80, right hemisphere 35.2
2111 Female, age 85, right hemisphere 35.2
2566 Female, age 72, unknown 33.6
Nucleus accumbens
nTPM: 38.1
2391 Female, age 94, left hemisphere 44.1
2698 Female, age 72, unknown 42.7
1856 Female, age 91, right hemisphere 39.5
1806 Female, age 85, left hemisphere 38.8
1783 Male, age 74, unknown 37.1
2286 Male, age 75, left hemisphere 36.6
2824 Male, age 61, right hemisphere 35.0
2732 Male, age 80, right hemisphere 30.8
Nucleus basalis of Meynert
nTPM: 34.9
2393 Male, age 80, right hemisphere 37.0
2569 Male, age 61, both hemispheres 34.4
2484 Female, age 94, left hemisphere 34.1
2821 Male, age 75, both hemispheres 34.1
Nucleus of the diagonal band
nTPM: 34.2
1812 Female, age 91, both hemispheres 37.3
2195 Female, age 85, both hemispheres 37.0
2775 Male, age 80, right hemisphere 34.7
1979 Male, age 74, unknown 32.4
2029 Male, age 61, right hemisphere 29.7
Olfactory tubercle
nTPM: 31.0
1846 Male, age 80, right hemisphere 34.0
1998 Female, age 91, both hemispheres 32.1
2856 Male, age 75, right hemisphere 30.6
2487 Female, age 94, left hemisphere 27.5
Putamen
nTPM: 36.1
1838 Male, age 80, right hemisphere 40.4
1829 Male, age 74, unknown 37.6
1937 Female, age 91, right hemisphere 37.6
2482 Female, age 94, left hemisphere 36.7
2466 Female, age 79, unknown 36.6
2647 Male, age 75, left hemisphere 33.0
2489 Female, age 72, unknown 30.9
Septal nuclei
nTPM: 33.0
2031 Female, age 72, unknown 36.2
1960 Male, age 74, unknown 36.1
2009 Female, age 91, both hemispheres 33.9
2629 Female, age 94, right hemisphere 32.4
2059 Female, age 85, both hemispheres 31.4
2394 Male, age 61, left hemisphere 30.7
2199 Male, age 80, right hemisphere 30.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.3
Samples: 246

Max nTPM: 78.1
Min nTPM: 13.1
Std nTPM: 6.5
Median nTPM: 20.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 78.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 52.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 50.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 48.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 44.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 40.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 35.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 33.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 33.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 33.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 33.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.7
Samples: 246

Max nTPM: 59.0
Min nTPM: 13.3
Std nTPM: 6.2
Median nTPM: 21.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 59.0
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 50.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 47.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 45.5
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 43.7
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 42.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 42.2
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 39.4
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 39.0
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 36.6
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 36.3
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Brain - Putamen (basal ganglia)
Average nTPM: 22.7
Samples: 205

Max nTPM: 58.4
Min nTPM: 14.2
Std nTPM: 5.8
Median nTPM: 21.3
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 58.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 54.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 44.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 39.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 38.4
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 38.1
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 36.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 35.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 34.7
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 34.0
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 33.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 144.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 133.2
FF:10164-103B2 76 years, female 133.2
Globus pallidus
Scaled Tags Per Million: 112.2
FF:10161-103A8 76 years, female 126.6
FF:10175-103C4 60 years, female 97.8
Nucleus accumbens
Scaled Tags Per Million: 88.0
FF:10037-101F1 23-56 years, mixed 88.0
Putamen
Scaled Tags Per Million: 144.5
FF:10176-103C5 60 years, female 144.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 36.7
Pig sample Sample description nTPM
Caudate
nTPM: 28.4
Samples: 4

Max nTPM: 29.6
Min nTPM: 25.8
Sample A Female 28.5
Sample B Female 25.8
Sample C Male 29.5
Sample D Male 29.6
Putamen
nTPM: 36.7
Samples: 4

Max nTPM: 48.8
Min nTPM: 29.1
Sample A Female 33.4
Sample B Female 29.1
Sample C Male 48.8
Sample D Male 35.6
Septum
nTPM: 30.8
Samples: 4

Max nTPM: 35.8
Min nTPM: 27.8
Sample A Female 29.7
Sample B Female 27.8
Sample C Male 35.8
Sample D Male 29.7
Ventral pallidum
nTPM: 32.2
Samples: 4

Max nTPM: 38.4
Min nTPM: 27.3
Sample A Female 29.8
Sample B Female 27.3
Sample C Male 38.4
Sample D Male 33.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 25.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 25.1
Samples: 4

Max nTPM: 26.6
Min nTPM: 24.1
Sample A Male 26.6
Sample B Male 24.1
Sample C Female 24.4
Sample D Female 25.2
Septum
nTPM: 23.8
Samples: 4

Max nTPM: 25.2
Min nTPM: 22.7
Sample A Male 23.0
Sample B Male 25.2
Sample C Female 24.1
Sample D Female 22.7
Ventral forebrain
nTPM: 24.8
Samples: 4

Max nTPM: 25.2
Min nTPM: 24.5
Sample A Male 25.2
Sample B Male 24.5
Sample C Female 24.8
Sample D Female 24.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.6
69080005 Antisense, RP_050324_01_C05, Mouse strain C57BL/6J (56 days, male) 6.6
Pallidum
Expression energy: 5.4
69080005 Antisense, RP_050324_01_C05, Mouse strain C57BL/6J (56 days, male) 5.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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