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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.3 nTPM
HPA:72.3 nTPM
GTEx:87.2 nTPM
FANTOM5:144.4 Scaled Tags Per Million
Pig:7.8 nTPM
Mouse:0.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.8
2586 Male, age 75, left hemisphere 128.6
2828 Female, age 72, unknown 73.0
1870 Female, age 42, unknown 70.1
2666 Male, age 74, left hemisphere 69.9
1830 Male, age 51, unknown 67.7
1827 Male, age 72, unknown 66.0
1833 Male, age 53, unknown 64.5
2019 Male, age 18, unknown 62.5
2411 Female, age 72, unknown 62.1
2219 Male, age 76, both hemispheres 53.2
Dorsal raphe nucleus
nTPM: 60.6
2047 Male, age 72, unknown 63.7
2016 Female, age 72, unknown 63.1
1828 Male, age 53, unknown 60.1
2750 Male, age 76, both hemispheres 59.9
2298 Female, age 72, unknown 56.2
Inferior colliculus
nTPM: 62.2
1890 Male, age 53, unknown 68.7
2849 Male, age 72, unknown 62.6
1848 Female, age 42, unknown 62.4
2097 Female, age 72, unknown 55.2
Median raphe nucleus
nTPM: 56.6
2220 Male, age 76, midline 56.6
Pedunculopontine tegmental nucleus
nTPM: 72.3
2338 Male, age 61, both hemispheres 97.6
2334 Male, age 80, both hemispheres 61.8
1921 Female, age 85, both hemispheres 57.5
Periaquaductal grey, anterior
nTPM: 67.0
1947 Male, age 18, unknown 71.3
1795 Male, age 51, unknown 70.4
2502 Female, age 75, unknown 59.2
Periaquaductal grey, dorsal
nTPM: 61.7
1831 Male, age 72, unknown 67.1
2850 Male, age 76, both hemispheres 62.8
2464 Female, age 72, unknown 61.2
1840 Male, age 53, unknown 55.7
Periaquaductal grey, lateral
nTPM: 63.0
2053 Male, age 18, unknown 69.6
2272 Male, age 74, both hemispheres 59.9
2140 Male, age 76, both hemispheres 59.7
Pretectal area
nTPM: 63.6
2407 Male, age 75, both hemispheres 74.3
2825 Male, age 18, unknown 66.7
1944 Female, age 72, unknown 66.6
1815 Male, age 53, unknown 65.3
2007 Male, age 72, unknown 64.0
1817 Female, age 42, unknown 63.7
2316 Male, age 76, right hemisphere 62.5
1816 Male, age 51, unknown 61.8
2667 Female, age 75, unknown 59.6
2224 Female, age 72, unknown 58.7
2273 Male, age 74, both hemispheres 56.5
Red nucleus
nTPM: 71.8
2584 Male, age 75, left hemisphere 83.1
2823 Male, age 76, right hemisphere 77.6
2725 Female, age 75, unknown 76.5
2769 Male, age 72, unknown 74.4
1821 Female, age 72, unknown 72.5
2588 Male, age 74, left hemisphere 72.0
2227 Male, age 72, unknown 71.9
1904 Male, age 53, unknown 68.9
1865 Male, age 51, unknown 68.7
1954 Female, age 42, unknown 68.5
2503 Female, age 72, unknown 65.2
2785 Male, age 18, unknown 62.6
Substantia nigra
nTPM: 71.0
1851 Male, age 51, unknown 79.7
2583 Male, age 75, right hemisphere 79.3
2590 Female, age 75, unknown 76.2
2665 Male, age 74, both hemispheres 74.4
2699 Male, age 18, unknown 73.4
1916 Female, age 42, unknown 72.1
2409 Female, age 72, unknown 67.9
1889 Female, age 72, unknown 63.9
1941 Male, age 53, unknown 62.2
2241 Male, age 72, unknown 61.2
Superior colliculus
nTPM: 65.6
1913 Female, age 42, unknown 76.2
2087 Female, age 72, unknown 71.3
1796 Male, age 53, unknown 69.7
2668 Female, age 75, unknown 68.9
2664 Male, age 75, both hemispheres 67.1
1995 Male, age 72, unknown 62.9
2261 Male, age 18, unknown 62.8
2587 Male, age 74, left hemisphere 61.2
1839 Male, age 51, unknown 59.3
1895 Male, age 76, right hemisphere 57.2
Ventral tegmental area
nTPM: 67.5
2021 Male, age 53, unknown 77.6
1915 Female, age 42, unknown 69.7
1942 Male, age 51, unknown 67.8
2218 Male, age 76, both hemispheres 65.9
2410 Female, age 72, unknown 64.1
2223 Female, age 72, unknown 59.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.2
Samples: 139

Max nTPM: 601.3
Min nTPM: 9.8
Std nTPM: 104.0
Median nTPM: 41.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 601.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 481.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 416.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 409.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 387.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 379.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 370.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 333.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 282.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 269.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 235.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 144.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 144.4
FF:10158-103A5 76 years, female 144.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.8
Pig sample Sample description nTPM
Midbrain
nTPM: 7.8
Samples: 4

Max nTPM: 15.4
Min nTPM: 4.7
Sample A Female 15.4
Sample B Female 5.0
Sample C Male 5.9
Sample D Male 4.7
Periaqueductal gray
nTPM: 5.0
Samples: 3

Max nTPM: 6.0
Min nTPM: 3.9
Sample B Female 5.0
Sample C Male 3.9
Sample D Male 6.0
Substantia nigra
nTPM: 7.7
Samples: 4

Max nTPM: 10.5
Min nTPM: 6.0
Sample A Female 6.0
Sample B Female 7.8
Sample C Male 6.5
Sample D Male 10.5
Superior colliculi
nTPM: 7.0
Samples: 4

Max nTPM: 8.3
Min nTPM: 6.1
Sample A Female 6.4
Sample B Female 6.1
Sample C Male 7.1
Sample D Male 8.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.8
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.4
Sample A Male 0.4
Sample B Male 0.8
Sample C Female 0.4
Sample D Female 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.