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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.1 nTPM
HPA:49.1 nTPM
GTEx:32.6 nTPM
FANTOM5:263.8 Scaled Tags Per Million
Pig:50.3 nTPM
Mouse:13.4 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.6
1830 Male, age 51, unknown 50.8
1833 Male, age 53, unknown 50.1
1870 Female, age 42, unknown 47.2
2411 Female, age 72, unknown 45.3
2219 Male, age 76, both hemispheres 41.9
2019 Male, age 18, unknown 40.0
2828 Female, age 72, unknown 38.9
2666 Male, age 74, left hemisphere 34.8
1827 Male, age 72, unknown 34.3
2586 Male, age 75, left hemisphere 33.1
Dorsal raphe nucleus
nTPM: 30.3
2750 Male, age 76, both hemispheres 47.9
2016 Female, age 72, unknown 36.4
1828 Male, age 53, unknown 28.8
2047 Male, age 72, unknown 20.0
2298 Female, age 72, unknown 18.6
Inferior colliculus
nTPM: 34.9
2849 Male, age 72, unknown 38.3
1848 Female, age 42, unknown 37.1
1890 Male, age 53, unknown 32.6
2097 Female, age 72, unknown 31.4
Median raphe nucleus
nTPM: 21.4
2220 Male, age 76, midline 21.4
Pedunculopontine tegmental nucleus
nTPM: 32.3
1921 Female, age 85, both hemispheres 37.0
2334 Male, age 80, both hemispheres 36.4
2338 Male, age 61, both hemispheres 23.5
Periaquaductal grey, anterior
nTPM: 35.1
2502 Female, age 75, unknown 46.0
1947 Male, age 18, unknown 35.1
1795 Male, age 51, unknown 24.1
Periaquaductal grey, dorsal
nTPM: 29.9
2464 Female, age 72, unknown 40.3
1840 Male, age 53, unknown 28.0
1831 Male, age 72, unknown 26.6
2850 Male, age 76, both hemispheres 24.6
Periaquaductal grey, lateral
nTPM: 27.0
2053 Male, age 18, unknown 30.8
2140 Male, age 76, both hemispheres 25.5
2272 Male, age 74, both hemispheres 24.6
Pretectal area
nTPM: 32.8
2316 Male, age 76, right hemisphere 50.9
1815 Male, age 53, unknown 43.4
2407 Male, age 75, both hemispheres 41.4
1817 Female, age 42, unknown 33.1
2825 Male, age 18, unknown 32.7
2007 Male, age 72, unknown 30.6
2667 Female, age 75, unknown 27.8
2273 Male, age 74, both hemispheres 25.6
2224 Female, age 72, unknown 25.3
1944 Female, age 72, unknown 25.0
1816 Male, age 51, unknown 24.7
Red nucleus
nTPM: 49.1
1865 Male, age 51, unknown 60.3
1904 Male, age 53, unknown 57.8
2823 Male, age 76, right hemisphere 53.2
2503 Female, age 72, unknown 52.8
1821 Female, age 72, unknown 52.2
1954 Female, age 42, unknown 50.8
2785 Male, age 18, unknown 50.3
2769 Male, age 72, unknown 49.9
2227 Male, age 72, unknown 49.7
2588 Male, age 74, left hemisphere 39.7
2725 Female, age 75, unknown 37.2
2584 Male, age 75, left hemisphere 34.9
Substantia nigra
nTPM: 32.0
2409 Female, age 72, unknown 47.9
2583 Male, age 75, right hemisphere 38.0
1889 Female, age 72, unknown 35.1
2699 Male, age 18, unknown 35.1
1851 Male, age 51, unknown 34.4
2241 Male, age 72, unknown 32.7
2590 Female, age 75, unknown 32.1
1916 Female, age 42, unknown 21.9
1941 Male, age 53, unknown 21.9
2665 Male, age 74, both hemispheres 20.9
Superior colliculus
nTPM: 43.2
1995 Male, age 72, unknown 64.8
1913 Female, age 42, unknown 62.2
1895 Male, age 76, right hemisphere 59.1
2668 Female, age 75, unknown 44.2
1839 Male, age 51, unknown 44.0
2587 Male, age 74, left hemisphere 37.0
1796 Male, age 53, unknown 33.5
2261 Male, age 18, unknown 30.1
2664 Male, age 75, both hemispheres 29.6
2087 Female, age 72, unknown 27.0
Ventral tegmental area
nTPM: 30.9
2410 Female, age 72, unknown 42.9
1942 Male, age 51, unknown 29.9
2021 Male, age 53, unknown 29.4
1915 Female, age 42, unknown 28.7
2223 Female, age 72, unknown 28.6
2218 Male, age 76, both hemispheres 26.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.6
Samples: 139

Max nTPM: 101.4
Min nTPM: 10.9
Std nTPM: 15.5
Median nTPM: 27.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 101.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 80.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 79.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 68.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 67.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 66.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 65.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 65.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 63.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 62.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 60.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 263.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 263.8
FF:10158-103A5 76 years, female 263.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.3
Pig sample Sample description nTPM
Midbrain
nTPM: 50.3
Samples: 4

Max nTPM: 90.2
Min nTPM: 36.5
Sample A Female 90.2
Sample B Female 37.4
Sample C Male 36.5
Sample D Male 37.0
Periaqueductal gray
nTPM: 34.1
Samples: 3

Max nTPM: 36.2
Min nTPM: 30.8
Sample B Female 35.4
Sample C Male 30.8
Sample D Male 36.2
Substantia nigra
nTPM: 46.4
Samples: 4

Max nTPM: 70.2
Min nTPM: 30.9
Sample A Female 43.6
Sample B Female 30.9
Sample C Male 40.8
Sample D Male 70.2
Superior colliculi
nTPM: 38.3
Samples: 4

Max nTPM: 52.2
Min nTPM: 22.2
Sample A Female 39.3
Sample B Female 22.2
Sample C Male 39.5
Sample D Male 52.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.4
Samples: 4

Max nTPM: 14.6
Min nTPM: 11.6
Sample A Male 11.6
Sample B Male 14.4
Sample C Female 14.6
Sample D Female 12.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
74821568 Antisense, RP_060321_02_A02, Mouse strain C57BL/6J (56 days, male) 7.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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