ABOUTMENU
HELP
NEWS
PACSIN3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.5 nTPM
HPA:27.5 nTPM
GTEx:27.9 nTPM
FANTOM5:18.3 Scaled Tags Per Million
Pig:16.3 nTPM
Mouse:22.5 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.2
1870 Female, age 42, unknown 26.1
1830 Male, age 51, unknown 26.0
2586 Male, age 75, left hemisphere 26.0
2411 Female, age 72, unknown 25.9
2019 Male, age 18, unknown 24.9
2828 Female, age 72, unknown 24.7
1833 Male, age 53, unknown 24.4
2219 Male, age 76, both hemispheres 23.6
1827 Male, age 72, unknown 20.0
2666 Male, age 74, left hemisphere 20.0
Dorsal raphe nucleus
nTPM: 20.1
2750 Male, age 76, both hemispheres 26.4
2016 Female, age 72, unknown 20.9
1828 Male, age 53, unknown 19.7
2047 Male, age 72, unknown 17.4
2298 Female, age 72, unknown 16.0
Inferior colliculus
nTPM: 19.2
2849 Male, age 72, unknown 21.5
1848 Female, age 42, unknown 20.1
1890 Male, age 53, unknown 18.9
2097 Female, age 72, unknown 16.2
Median raphe nucleus
nTPM: 18.7
2220 Male, age 76, midline 18.7
Pedunculopontine tegmental nucleus
nTPM: 20.5
2334 Male, age 80, both hemispheres 21.0
2338 Male, age 61, both hemispheres 20.3
1921 Female, age 85, both hemispheres 20.2
Periaquaductal grey, anterior
nTPM: 20.1
2502 Female, age 75, unknown 23.4
1795 Male, age 51, unknown 18.5
1947 Male, age 18, unknown 18.5
Periaquaductal grey, dorsal
nTPM: 18.0
2464 Female, age 72, unknown 19.3
2850 Male, age 76, both hemispheres 18.7
1831 Male, age 72, unknown 17.5
1840 Male, age 53, unknown 16.5
Periaquaductal grey, lateral
nTPM: 20.5
2140 Male, age 76, both hemispheres 22.9
2053 Male, age 18, unknown 19.9
2272 Male, age 74, both hemispheres 18.6
Pretectal area
nTPM: 19.0
2667 Female, age 75, unknown 22.5
2316 Male, age 76, right hemisphere 21.5
1815 Male, age 53, unknown 21.4
2407 Male, age 75, both hemispheres 20.6
2825 Male, age 18, unknown 20.4
2273 Male, age 74, both hemispheres 19.4
2007 Male, age 72, unknown 18.0
1817 Female, age 42, unknown 17.7
2224 Female, age 72, unknown 17.2
1816 Male, age 51, unknown 15.8
1944 Female, age 72, unknown 14.9
Red nucleus
nTPM: 27.5
2769 Male, age 72, unknown 32.7
2227 Male, age 72, unknown 32.1
1904 Male, age 53, unknown 30.3
1865 Male, age 51, unknown 30.1
2823 Male, age 76, right hemisphere 27.8
2503 Female, age 72, unknown 27.4
2588 Male, age 74, left hemisphere 27.1
1821 Female, age 72, unknown 25.8
1954 Female, age 42, unknown 25.5
2584 Male, age 75, left hemisphere 25.4
2785 Male, age 18, unknown 24.6
2725 Female, age 75, unknown 21.1
Substantia nigra
nTPM: 18.7
2583 Male, age 75, right hemisphere 22.7
2699 Male, age 18, unknown 22.5
1851 Male, age 51, unknown 21.1
1889 Female, age 72, unknown 19.8
2590 Female, age 75, unknown 18.1
2409 Female, age 72, unknown 17.9
1916 Female, age 42, unknown 17.1
1941 Male, age 53, unknown 16.9
2665 Male, age 74, both hemispheres 16.2
2241 Male, age 72, unknown 15.1
Superior colliculus
nTPM: 21.1
1913 Female, age 42, unknown 27.8
1995 Male, age 72, unknown 24.7
1839 Male, age 51, unknown 21.8
2664 Male, age 75, both hemispheres 21.7
2587 Male, age 74, left hemisphere 20.6
1895 Male, age 76, right hemisphere 19.9
1796 Male, age 53, unknown 19.6
2668 Female, age 75, unknown 19.4
2261 Male, age 18, unknown 18.5
2087 Female, age 72, unknown 16.5
Ventral tegmental area
nTPM: 20.8
2223 Female, age 72, unknown 27.5
2021 Male, age 53, unknown 20.8
2410 Female, age 72, unknown 20.4
2218 Male, age 76, both hemispheres 19.3
1942 Male, age 51, unknown 18.9
1915 Female, age 42, unknown 17.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.9
Samples: 139

Max nTPM: 71.4
Min nTPM: 8.7
Std nTPM: 10.2
Median nTPM: 26.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 71.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 64.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 61.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 58.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 54.5
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 47.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 45.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 44.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 42.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 42.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 40.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.3
FF:10158-103A5 76 years, female 18.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.3
Pig sample Sample description nTPM
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 33.2
Min nTPM: 9.2
Sample A Female 33.2
Sample B Female 13.5
Sample C Male 9.4
Sample D Male 9.2
Periaqueductal gray
nTPM: 12.3
Samples: 3

Max nTPM: 12.6
Min nTPM: 11.8
Sample B Female 12.6
Sample C Male 12.6
Sample D Male 11.8
Substantia nigra
nTPM: 15.3
Samples: 4

Max nTPM: 20.9
Min nTPM: 12.0
Sample A Female 15.6
Sample B Female 12.6
Sample C Male 12.0
Sample D Male 20.9
Superior colliculi
nTPM: 13.6
Samples: 4

Max nTPM: 15.2
Min nTPM: 12.2
Sample A Female 14.6
Sample B Female 12.2
Sample C Male 12.4
Sample D Male 15.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 26.6
Min nTPM: 19.8
Sample A Male 26.6
Sample B Male 21.8
Sample C Female 19.8
Sample D Female 21.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
513493 Antisense, RP_040810_02_A03, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.