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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.6 nTPM
HPA:40.6 nTPM
GTEx:22.7 nTPM
FANTOM5:116.7 Scaled Tags Per Million
Pig:43.6 nTPM
Mouse:67.9 nTPM
Allen mouse:6.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.4
1781 Male, age 74, unknown 3.3
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 9.7
1956 Male, age 74, unknown 18.9
2392 Female, age 94, both hemispheres 17.3
2491 Male, age 75, both hemispheres 16.3
2284 Female, age 91, both hemispheres 11.5
2568 Male, age 61, both hemispheres 8.1
2198 Male, age 80, both hemispheres 7.9
2645 Female, age 72, unknown 7.1
2196 Female, age 79, unknown 0.0
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 1.3
1856 Female, age 91, right hemisphere 8.2
1783 Male, age 74, unknown 2.7
1806 Female, age 85, left hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 37.9
1812 Female, age 91, both hemispheres 55.2
2029 Male, age 61, right hemisphere 45.2
2775 Male, age 80, right hemisphere 44.3
2195 Female, age 85, both hemispheres 38.7
1979 Male, age 74, unknown 6.3
Olfactory tubercle
nTPM: 40.6
1998 Female, age 91, both hemispheres 52.6
2487 Female, age 94, left hemisphere 50.8
1846 Male, age 80, right hemisphere 32.7
2856 Male, age 75, right hemisphere 26.2
Putamen
nTPM: 0.1
1937 Female, age 91, right hemisphere 0.7
2466 Female, age 79, unknown 0.5
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 28.2
2031 Female, age 72, unknown 51.7
1960 Male, age 74, unknown 51.5
2629 Female, age 94, right hemisphere 44.5
2009 Female, age 91, both hemispheres 38.5
2059 Female, age 85, both hemispheres 11.4
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.4
Samples: 246

Max nTPM: 76.9
Min nTPM: 1.0
Std nTPM: 10.9
Median nTPM: 18.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 76.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 46.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 39.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 39.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 39.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 39.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 37.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 37.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 37.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 36.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 36.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.7
Samples: 246

Max nTPM: 48.9
Min nTPM: 0.7
Std nTPM: 11.2
Median nTPM: 23.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 48.9
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 46.5
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 45.9
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 44.5
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 44.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 44.0
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 43.5
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 41.4
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 41.3
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 41.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 40.9
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Brain - Putamen (basal ganglia)
Average nTPM: 17.1
Samples: 205

Max nTPM: 44.8
Min nTPM: 0.2
Std nTPM: 10.3
Median nTPM: 16.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 44.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 44.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 37.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 36.6
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 36.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 35.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 35.6
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 34.8
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 34.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 34.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 34.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 116.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.8
FF:10164-103B2 76 years, female 39.8
Globus pallidus
Scaled Tags Per Million: 15.3
FF:10175-103C4 60 years, female 24.4
FF:10161-103A8 76 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 116.7
FF:10037-101F1 23-56 years, mixed 116.7
Putamen
Scaled Tags Per Million: 78.2
FF:10176-103C5 60 years, female 78.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 43.6
Pig sample Sample description nTPM
Caudate
nTPM: 33.4
Samples: 4

Max nTPM: 39.4
Min nTPM: 29.4
Sample A Female 29.4
Sample B Female 30.6
Sample C Male 39.4
Sample D Male 34.0
Putamen
nTPM: 28.4
Samples: 4

Max nTPM: 39.2
Min nTPM: 15.0
Sample A Female 15.0
Sample B Female 27.7
Sample C Male 39.2
Sample D Male 31.8
Septum
nTPM: 43.6
Samples: 4

Max nTPM: 50.5
Min nTPM: 37.6
Sample A Female 37.6
Sample B Female 39.7
Sample C Male 46.6
Sample D Male 50.5
Ventral pallidum
nTPM: 31.8
Samples: 4

Max nTPM: 40.8
Min nTPM: 22.7
Sample A Female 37.2
Sample B Female 22.7
Sample C Male 40.8
Sample D Male 26.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 67.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 67.9
Samples: 4

Max nTPM: 76.1
Min nTPM: 61.6
Sample A Male 63.9
Sample B Male 61.6
Sample C Female 76.1
Sample D Female 70.0
Septum
nTPM: 67.8
Samples: 4

Max nTPM: 70.8
Min nTPM: 66.2
Sample A Male 67.5
Sample B Male 66.2
Sample C Female 66.7
Sample D Female 70.8
Ventral forebrain
nTPM: 66.0
Samples: 4

Max nTPM: 72.0
Min nTPM: 58.6
Sample A Male 66.1
Sample B Male 67.3
Sample C Female 58.6
Sample D Female 72.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.3
68797529 Antisense, RP_050210_02_E10, Mouse strain C57BL/6J (56 days, male) 14.5
71064082 Antisense, RP_050725_03_D01, Mouse strain C57BL/6J (56 days, male) 8.2
73512195 Antisense, RP_050712_03_D11, Mouse strain C57BL/6J (56 days, male) 1.5
79762688 Antisense, RP_071204_04_D08, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 4.5
68797529 Antisense, RP_050210_02_E10, Mouse strain C57BL/6J (56 days, male) 11.5
71064082 Antisense, RP_050725_03_D01, Mouse strain C57BL/6J (56 days, male) 4.8
73512195 Antisense, RP_050712_03_D11, Mouse strain C57BL/6J (56 days, male) 1.0
79762688 Antisense, RP_071204_04_D08, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.