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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.2 nTPM
HPA:54.2 nTPM
GTEx:52.6 nTPM
FANTOM5:112.8 Scaled Tags Per Million
Pig:166.1 nTPM
Mouse:134.8 nTPM
Allen mouse:10.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 54.2
Sample id Sample description nTPM
Hippocampus
nTPM: 34.5
1855 Male, age 76, left hemisphere 54.9
1898 Male, age 80, left hemisphere 53.9
2621 Female, age 67, right hemisphere 45.1
2148 Female, age 91, left hemisphere 36.8
1911 Female, age 85, right hemisphere 16.2
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 37.5
1927 Female, age 91, both hemispheres 69.5
2010 Male, age 76, both hemispheres 50.6
2530 Female, age 94, left hemisphere 29.0
2246 Female, age 85, both hemispheres 26.6
2528 Male, age 74, both hemispheres 25.6
2531 Female, age 67, both hemispheres 23.6
Entorhinal gyrus
nTPM: 33.8
2613 Female, age 94, left hemisphere 65.1
1938 Female, age 85, left hemisphere 51.1
1787 Male, age 76, left hemisphere 35.1
2764 Male, age 80, right hemisphere 33.7
2686 Male, age 75, right hemisphere 16.2
2117 Female, age 91, right hemisphere 1.5
Hippocampus, CA1
nTPM: 54.2
2749 Male, age 80, left hemisphere 151.4
1873 Female, age 85, both hemispheres 46.6
2045 Male, age 76, both hemispheres 30.9
2527 Male, age 74, both hemispheres 27.2
2082 Female, age 91, right hemisphere 14.9
Hippocampus, CA2
nTPM: 36.6
1963 Male, age 80, left hemisphere 68.6
1892 Male, age 76, both hemispheres 62.6
1940 Female, age 85, left hemisphere 26.7
2249 Male, age 74, both hemispheres 22.7
2113 Female, age 91, right hemisphere 21.0
2437 Female, age 94, left hemisphere 17.9
Hippocampus, CA3
nTPM: 35.6
2137 Male, age 80, left hemisphere 95.1
2861 Female, age 67, both hemispheres 34.0
1867 Male, age 76, both hemispheres 29.6
2620 Female, age 94, left hemisphere 27.4
2436 Male, age 74, both hemispheres 18.5
1891 Female, age 85, both hemispheres 9.1
Parahippocampal cortex
nTPM: 32.6
2245 Female, age 91, both hemispheres 54.0
1990 Female, age 91, right hemisphere 47.4
1850 Male, age 80, both hemispheres 39.8
2250 Female, age 67, right hemisphere 36.5
1933 Female, age 85, both hemispheres 34.1
2693 Female, age 94, both hemispheres 31.8
2532 Female, age 72, left hemisphere 28.2
2018 Male, age 76, both hemispheres 23.8
2692 Male, age 74, both hemispheres 16.0
2622 Female, age 67, right hemisphere 14.4
Perirhinal gyrus
nTPM: 53.5
1847 Female, age 91, left hemisphere 91.7
2521 Female, age 94, right hemisphere 68.2
1794 Male, age 80, right hemisphere 38.6
1841 Female, age 85, right hemisphere 35.9
2848 Male, age 76, right hemisphere 33.1
Subiculum
nTPM: 16.0
1901 Male, age 80, both hemispheres 31.9
1977 Female, age 85, both hemispheres 26.7
2042 Male, age 76, both hemispheres 21.4
2729 Female, age 91, right hemisphere 8.2
2619 Male, age 74, both hemispheres 6.5
2438 Female, age 94, left hemisphere 1.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 52.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 52.6
Samples: 197

Max nTPM: 198.2
Min nTPM: 0.6
Std nTPM: 43.3
Median nTPM: 42.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 198.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 185.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 185.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 168.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 167.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 161.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 144.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 144.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 141.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 139.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 135.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 112.8
FF:10169-103B7 60 years, female 155.9
FF:10153-102I9 76 years, female 69.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 166.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 166.1
Samples: 4

Max nTPM: 232.7
Min nTPM: 95.2
Sample A Female 222.9
Sample B Female 232.7
Sample C Male 95.2
Sample D Male 113.4
Entorhinal cortex
nTPM: 45.6
Samples: 4

Max nTPM: 53.6
Min nTPM: 36.1
Sample A Female 50.6
Sample B Female 36.1
Sample C Male 53.6
Sample D Male 42.0
Subiculum
nTPM: 66.8
Samples: 4

Max nTPM: 78.8
Min nTPM: 57.9
Sample A Female 70.9
Sample B Female 59.5
Sample C Male 78.8
Sample D Male 57.9
Ventral hippocampus
nTPM: 142.6
Samples: 4

Max nTPM: 238.7
Min nTPM: 73.4
Sample A Female 133.3
Sample B Female 73.4
Sample C Male 124.8
Sample D Male 238.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 134.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 70.7
Samples: 4

Max nTPM: 86.0
Min nTPM: 54.0
Sample A Male 61.7
Sample B Male 54.0
Sample C Female 86.0
Sample D Female 81.0
Hippocampal formation
nTPM: 134.8
Samples: 4

Max nTPM: 161.5
Min nTPM: 110.0
Sample A Male 117.5
Sample B Male 150.3
Sample C Female 161.5
Sample D Female 110.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.7
68797529 Antisense, RP_050210_02_E10, Mouse strain C57BL/6J (56 days, male) 17.5
71064082 Antisense, RP_050725_03_D01, Mouse strain C57BL/6J (56 days, male) 12.7
73512195 Antisense, RP_050712_03_D11, Mouse strain C57BL/6J (56 days, male) 7.7
79762688 Antisense, RP_071204_04_D08, Mouse strain C57BL/6J (56 days, male) 5.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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