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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.4 nTPM
HPA:12.4 nTPM
GTEx:13.2 nTPM
FANTOM5:84.1 Scaled Tags Per Million
Pig:37.3 nTPM
Mouse:59.9 nTPM
Allen mouse:13.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.3
2846 Female, age 79, unknown 11.8
2289 Male, age 61, right hemisphere 10.6
2290 Female, age 72, unknown 7.6
1781 Male, age 74, unknown 5.2
1854 Male, age 80, left hemisphere 3.8
1857 Female, age 85, left hemisphere 2.8
2288 Male, age 75, left hemisphere 0.8
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 5.6
2568 Male, age 61, both hemispheres 8.7
2284 Female, age 91, both hemispheres 8.4
2198 Male, age 80, both hemispheres 8.2
2645 Female, age 72, unknown 7.9
2491 Male, age 75, both hemispheres 7.2
1956 Male, age 74, unknown 5.0
2392 Female, age 94, both hemispheres 4.9
2196 Female, age 79, unknown 0.0
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 5.6
2824 Male, age 61, right hemisphere 14.6
1856 Female, age 91, right hemisphere 14.5
1783 Male, age 74, unknown 8.9
2698 Female, age 72, unknown 4.2
1806 Female, age 85, left hemisphere 3.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 1.7
2393 Male, age 80, right hemisphere 3.6
2484 Female, age 94, left hemisphere 3.5
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 7.1
2029 Male, age 61, right hemisphere 12.2
1812 Female, age 91, both hemispheres 8.9
2195 Female, age 85, both hemispheres 7.3
2775 Male, age 80, right hemisphere 7.2
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 12.4
2856 Male, age 75, right hemisphere 13.8
1998 Female, age 91, both hemispheres 13.2
2487 Female, age 94, left hemisphere 12.5
1846 Male, age 80, right hemisphere 10.0
Putamen
nTPM: 6.6
2466 Female, age 79, unknown 12.5
1829 Male, age 74, unknown 11.5
1838 Male, age 80, right hemisphere 10.2
1937 Female, age 91, right hemisphere 7.5
2489 Female, age 72, unknown 4.4
2482 Female, age 94, left hemisphere 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 5.8
2031 Female, age 72, unknown 13.8
2629 Female, age 94, right hemisphere 11.7
1960 Male, age 74, unknown 10.3
2009 Female, age 91, both hemispheres 5.2
2059 Female, age 85, both hemispheres 0.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.2
Samples: 246

Max nTPM: 69.7
Min nTPM: 0.6
Std nTPM: 9.1
Median nTPM: 11.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 69.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 39.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 38.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 38.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 32.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 32.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 31.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 30.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 30.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 29.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 29.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.2
Samples: 246

Max nTPM: 33.3
Min nTPM: 0.4
Std nTPM: 7.0
Median nTPM: 13.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 33.3
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 32.9
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 29.8
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 29.0
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 28.7
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 28.5
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 27.8
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 27.5
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 26.5
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 26.4
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 26.2
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Brain - Putamen (basal ganglia)
Average nTPM: 12.2
Samples: 205

Max nTPM: 43.1
Min nTPM: 0.4
Std nTPM: 8.0
Median nTPM: 11.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 43.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 37.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 35.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 32.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 32.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 30.4
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 29.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 28.1
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 27.2
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 26.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 26.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 68.3
FF:10164-103B2 76 years, female 68.3
Globus pallidus
Scaled Tags Per Million: 24.7
FF:10175-103C4 60 years, female 41.0
FF:10161-103A8 76 years, female 8.4
Nucleus accumbens
Scaled Tags Per Million: 81.6
FF:10037-101F1 23-56 years, mixed 81.6
Putamen
Scaled Tags Per Million: 84.1
FF:10176-103C5 60 years, female 84.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.3
Pig sample Sample description nTPM
Caudate
nTPM: 32.5
Samples: 4

Max nTPM: 35.1
Min nTPM: 29.2
Sample A Female 29.2
Sample B Female 32.5
Sample C Male 35.1
Sample D Male 33.0
Putamen
nTPM: 37.3
Samples: 4

Max nTPM: 58.5
Min nTPM: 13.2
Sample A Female 13.2
Sample B Female 40.4
Sample C Male 58.5
Sample D Male 37.1
Septum
nTPM: 14.8
Samples: 4

Max nTPM: 22.0
Min nTPM: 6.4
Sample A Female 22.0
Sample B Female 21.0
Sample C Male 9.9
Sample D Male 6.4
Ventral pallidum
nTPM: 24.7
Samples: 4

Max nTPM: 29.4
Min nTPM: 17.5
Sample A Female 28.7
Sample B Female 29.4
Sample C Male 17.5
Sample D Male 23.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 59.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 59.9
Samples: 4

Max nTPM: 64.0
Min nTPM: 56.1
Sample A Male 64.0
Sample B Male 61.0
Sample C Female 58.6
Sample D Female 56.1
Septum
nTPM: 17.9
Samples: 4

Max nTPM: 22.7
Min nTPM: 15.8
Sample A Male 22.7
Sample B Male 15.8
Sample C Female 16.9
Sample D Female 16.1
Ventral forebrain
nTPM: 43.7
Samples: 4

Max nTPM: 47.1
Min nTPM: 39.5
Sample A Male 42.3
Sample B Male 39.5
Sample C Female 47.1
Sample D Female 45.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 13.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 13.0
72129248 Antisense, RP_051017_03_E08, Mouse strain C57BL/6J (56 days, male) 16.1
69104162 Antisense, RP_050316_02_B04, Mouse strain C57BL/6J (56 days, male) 9.9
Pallidum
Expression energy: 5.7
72129248 Antisense, RP_051017_03_E08, Mouse strain C57BL/6J (56 days, male) 5.8
69104162 Antisense, RP_050316_02_B04, Mouse strain C57BL/6J (56 days, male) 5.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.