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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.5 nTPM
HPA:17.5 nTPM
GTEx:12.7 nTPM
FANTOM5:70.0 Scaled Tags Per Million
Pig:41.1 nTPM
Mouse:44.4 nTPM
Allen mouse:11.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.5
Sample id Sample description nTPM
Hippocampus
nTPM: 11.5
1855 Male, age 76, left hemisphere 23.8
1898 Male, age 80, left hemisphere 19.0
2148 Female, age 91, left hemisphere 14.5
2621 Female, age 67, right hemisphere 12.0
1911 Female, age 85, right hemisphere 0.0
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 13.9
1927 Female, age 91, both hemispheres 30.6
2010 Male, age 76, both hemispheres 27.3
2531 Female, age 67, both hemispheres 9.1
2530 Female, age 94, left hemisphere 8.4
2246 Female, age 85, both hemispheres 6.0
2528 Male, age 74, both hemispheres 2.3
Entorhinal gyrus
nTPM: 3.1
1787 Male, age 76, left hemisphere 5.8
2686 Male, age 75, right hemisphere 3.6
2613 Female, age 94, left hemisphere 3.3
2764 Male, age 80, right hemisphere 3.2
1938 Female, age 85, left hemisphere 2.7
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 12.0
1873 Female, age 85, both hemispheres 20.7
2749 Male, age 80, left hemisphere 20.0
2045 Male, age 76, both hemispheres 19.5
2082 Female, age 91, right hemisphere 0.0
2527 Male, age 74, both hemispheres 0.0
Hippocampus, CA2
nTPM: 10.0
1892 Male, age 76, both hemispheres 34.3
1963 Male, age 80, left hemisphere 25.1
2113 Female, age 91, right hemisphere 0.6
2437 Female, age 94, left hemisphere 0.2
1940 Female, age 85, left hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
Hippocampus, CA3
nTPM: 12.4
1867 Male, age 76, both hemispheres 22.8
2137 Male, age 80, left hemisphere 22.3
2861 Female, age 67, both hemispheres 16.8
2620 Female, age 94, left hemisphere 12.9
1891 Female, age 85, both hemispheres 0.0
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 8.9
2532 Female, age 72, left hemisphere 13.1
2250 Female, age 67, right hemisphere 12.5
2622 Female, age 67, right hemisphere 11.9
1850 Male, age 80, both hemispheres 11.3
2018 Male, age 76, both hemispheres 10.4
2245 Female, age 91, both hemispheres 9.8
2693 Female, age 94, both hemispheres 7.4
1933 Female, age 85, both hemispheres 6.6
1990 Female, age 91, right hemisphere 6.0
2692 Male, age 74, both hemispheres 0.0
Perirhinal gyrus
nTPM: 17.5
2521 Female, age 94, right hemisphere 27.7
1794 Male, age 80, right hemisphere 17.1
1847 Female, age 91, left hemisphere 16.9
1841 Female, age 85, right hemisphere 13.4
2848 Male, age 76, right hemisphere 12.1
Subiculum
nTPM: 1.9
1901 Male, age 80, both hemispheres 3.9
2042 Male, age 76, both hemispheres 3.4
2729 Female, age 91, right hemisphere 2.3
1977 Female, age 85, both hemispheres 2.0
2438 Female, age 94, left hemisphere 0.0
2619 Male, age 74, both hemispheres 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.7
Samples: 197

Max nTPM: 59.0
Min nTPM: 0.3
Std nTPM: 9.5
Median nTPM: 10.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 59.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 46.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 41.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 41.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 38.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 38.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 35.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 32.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 32.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 32.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 31.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 70.0
FF:10169-103B7 60 years, female 104.6
FF:10153-102I9 76 years, female 35.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 41.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 35.1
Samples: 4

Max nTPM: 46.3
Min nTPM: 15.9
Sample A Female 46.3
Sample B Female 41.5
Sample C Male 15.9
Sample D Male 36.8
Entorhinal cortex
nTPM: 27.9
Samples: 4

Max nTPM: 29.8
Min nTPM: 25.9
Sample A Female 28.0
Sample B Female 27.9
Sample C Male 29.8
Sample D Male 25.9
Subiculum
nTPM: 31.6
Samples: 4

Max nTPM: 39.8
Min nTPM: 28.1
Sample A Female 39.8
Sample B Female 30.2
Sample C Male 28.1
Sample D Male 28.3
Ventral hippocampus
nTPM: 41.1
Samples: 4

Max nTPM: 71.9
Min nTPM: 22.9
Sample A Female 71.9
Sample B Female 28.1
Sample C Male 41.5
Sample D Male 22.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 44.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 28.5
Samples: 4

Max nTPM: 35.5
Min nTPM: 23.9
Sample A Male 23.9
Sample B Male 24.4
Sample C Female 30.1
Sample D Female 35.5
Hippocampal formation
nTPM: 44.4
Samples: 4

Max nTPM: 52.6
Min nTPM: 37.0
Sample A Male 38.3
Sample B Male 49.5
Sample C Female 52.6
Sample D Female 37.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.4
72129248 Antisense, RP_051017_03_E08, Mouse strain C57BL/6J (56 days, male) 14.7
69104162 Antisense, RP_050316_02_B04, Mouse strain C57BL/6J (56 days, male) 8.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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