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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:68.8 nTPM
HPA:68.8 nTPM
GTEx:66.9 nTPM
FANTOM5:432.7 Scaled Tags Per Million
Pig:206.0 nTPM
Mouse:177.8 nTPM
Allen mouse:13.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA016738Antibody HPA016739
Glial cells HighMedium
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 68.8
Sample id Sample description nTPM
Hippocampus
nTPM: 48.8
2621 Female, age 67, right hemisphere 60.3
1855 Male, age 76, left hemisphere 60.1
1898 Male, age 80, left hemisphere 58.1
1911 Female, age 85, right hemisphere 44.1
2529 Female, age 94, left hemisphere 36.2
2148 Female, age 91, left hemisphere 34.2
Dentate gyrus
nTPM: 48.9
2010 Male, age 76, both hemispheres 58.7
2246 Female, age 85, both hemispheres 58.5
1927 Female, age 91, both hemispheres 51.4
2530 Female, age 94, left hemisphere 42.2
2528 Male, age 74, both hemispheres 41.5
2531 Female, age 67, both hemispheres 41.0
Entorhinal gyrus
nTPM: 51.4
1938 Female, age 85, left hemisphere 65.0
2764 Male, age 80, right hemisphere 56.3
2613 Female, age 94, left hemisphere 56.1
1787 Male, age 76, left hemisphere 55.0
2686 Male, age 75, right hemisphere 38.7
2117 Female, age 91, right hemisphere 37.3
Hippocampus, CA1
nTPM: 55.7
2749 Male, age 80, left hemisphere 78.7
1873 Female, age 85, both hemispheres 61.9
2045 Male, age 76, both hemispheres 55.0
2527 Male, age 74, both hemispheres 45.6
2082 Female, age 91, right hemisphere 37.1
Hippocampus, CA2
nTPM: 49.4
1892 Male, age 76, both hemispheres 67.5
1940 Female, age 85, left hemisphere 55.9
1963 Male, age 80, left hemisphere 48.2
2249 Male, age 74, both hemispheres 46.7
2437 Female, age 94, left hemisphere 41.0
2113 Female, age 91, right hemisphere 36.8
Hippocampus, CA3
nTPM: 52.4
2620 Female, age 94, left hemisphere 73.3
2137 Male, age 80, left hemisphere 67.2
1867 Male, age 76, both hemispheres 56.6
1891 Female, age 85, both hemispheres 48.0
2436 Male, age 74, both hemispheres 37.5
2861 Female, age 67, both hemispheres 31.6
Parahippocampal cortex
nTPM: 54.3
1850 Male, age 80, both hemispheres 74.0
1933 Female, age 85, both hemispheres 66.9
2532 Female, age 72, left hemisphere 65.8
2245 Female, age 91, both hemispheres 54.7
2693 Female, age 94, both hemispheres 53.2
2018 Male, age 76, both hemispheres 51.6
1990 Female, age 91, right hemisphere 46.5
2250 Female, age 67, right hemisphere 43.8
2692 Male, age 74, both hemispheres 43.8
2622 Female, age 67, right hemisphere 42.4
Perirhinal gyrus
nTPM: 68.8
1794 Male, age 80, right hemisphere 76.9
1841 Female, age 85, right hemisphere 74.3
1847 Female, age 91, left hemisphere 72.0
2521 Female, age 94, right hemisphere 62.6
2848 Male, age 76, right hemisphere 58.3
Subiculum
nTPM: 47.1
1977 Female, age 85, both hemispheres 57.4
1901 Male, age 80, both hemispheres 56.0
2042 Male, age 76, both hemispheres 50.6
2619 Male, age 74, both hemispheres 45.8
2438 Female, age 94, left hemisphere 45.0
2729 Female, age 91, right hemisphere 27.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 66.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 66.9
Samples: 197

Max nTPM: 109.8
Min nTPM: 31.3
Std nTPM: 15.3
Median nTPM: 64.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 109.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 107.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 102.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 100.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 100.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 98.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 97.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 97.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 97.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 96.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 95.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 432.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 432.7
FF:10169-103B7 60 years, female 583.8
FF:10153-102I9 76 years, female 281.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 206.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 192.8
Samples: 4

Max nTPM: 238.7
Min nTPM: 145.6
Sample A Female 238.7
Sample B Female 197.8
Sample C Male 189.2
Sample D Male 145.6
Entorhinal cortex
nTPM: 206.1
Samples: 4

Max nTPM: 223.7
Min nTPM: 189.3
Sample A Female 223.7
Sample B Female 199.2
Sample C Male 212.0
Sample D Male 189.3
Subiculum
nTPM: 198.3
Samples: 4

Max nTPM: 262.3
Min nTPM: 171.6
Sample A Female 262.3
Sample B Female 186.9
Sample C Male 172.3
Sample D Male 171.6
Ventral hippocampus
nTPM: 180.3
Samples: 4

Max nTPM: 206.0
Min nTPM: 135.3
Sample A Female 179.2
Sample B Female 135.3
Sample C Male 206.0
Sample D Male 200.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 177.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 177.8
Samples: 4

Max nTPM: 208.1
Min nTPM: 163.6
Sample A Male 164.2
Sample B Male 175.1
Sample C Female 163.6
Sample D Female 208.1
Hippocampal formation
nTPM: 147.9
Samples: 4

Max nTPM: 152.1
Min nTPM: 145.8
Sample A Male 152.1
Sample B Male 148.0
Sample C Female 145.8
Sample D Female 145.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.0
659 Antisense, RP_040324_01_E10, Mouse strain C57BL/6J (56 days, male) 13.0
660 Antisense, RP_040324_01_E10, Mouse strain C57BL/6J (56 days, male) 10.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.