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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.0 nTPM
HPA:61.0 nTPM
GTEx:71.5 nTPM
FANTOM5:190.7 Scaled Tags Per Million
Pig:227.4 nTPM
Mouse:170.6 nTPM
Allen mouse:10.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.5
2019 Male, age 18, unknown 63.1
2586 Male, age 75, left hemisphere 60.3
1870 Female, age 42, unknown 54.1
1833 Male, age 53, unknown 52.9
2411 Female, age 72, unknown 51.4
1827 Male, age 72, unknown 50.7
1830 Male, age 51, unknown 48.9
2666 Male, age 74, left hemisphere 47.0
2828 Female, age 72, unknown 44.3
2219 Male, age 76, both hemispheres 42.3
Dorsal raphe nucleus
nTPM: 38.5
2750 Male, age 76, both hemispheres 57.7
1828 Male, age 53, unknown 38.2
2047 Male, age 72, unknown 34.8
2298 Female, age 72, unknown 32.5
2016 Female, age 72, unknown 29.2
Inferior colliculus
nTPM: 42.0
1848 Female, age 42, unknown 43.8
2849 Male, age 72, unknown 43.1
2097 Female, age 72, unknown 41.3
1890 Male, age 53, unknown 39.9
Median raphe nucleus
nTPM: 58.1
2220 Male, age 76, midline 58.1
Pedunculopontine tegmental nucleus
nTPM: 51.1
2334 Male, age 80, both hemispheres 58.1
2338 Male, age 61, both hemispheres 50.3
1921 Female, age 85, both hemispheres 44.9
Periaquaductal grey, anterior
nTPM: 39.1
2502 Female, age 75, unknown 44.2
1795 Male, age 51, unknown 38.7
1947 Male, age 18, unknown 34.5
Periaquaductal grey, dorsal
nTPM: 40.9
2850 Male, age 76, both hemispheres 51.8
1831 Male, age 72, unknown 42.3
1840 Male, age 53, unknown 35.6
2464 Female, age 72, unknown 33.8
Periaquaductal grey, lateral
nTPM: 43.3
2140 Male, age 76, both hemispheres 48.1
2053 Male, age 18, unknown 42.1
2272 Male, age 74, both hemispheres 39.7
Pretectal area
nTPM: 61.0
1816 Male, age 51, unknown 89.7
1944 Female, age 72, unknown 88.1
1817 Female, age 42, unknown 77.0
1815 Male, age 53, unknown 76.3
2007 Male, age 72, unknown 74.3
2407 Male, age 75, both hemispheres 60.7
2667 Female, age 75, unknown 50.0
2316 Male, age 76, right hemisphere 43.8
2825 Male, age 18, unknown 38.1
2224 Female, age 72, unknown 37.4
2273 Male, age 74, both hemispheres 35.9
Red nucleus
nTPM: 55.5
2785 Male, age 18, unknown 67.7
1821 Female, age 72, unknown 63.2
2725 Female, age 75, unknown 61.4
1865 Male, age 51, unknown 59.6
2588 Male, age 74, left hemisphere 54.2
2227 Male, age 72, unknown 53.0
2769 Male, age 72, unknown 52.2
2584 Male, age 75, left hemisphere 51.4
2823 Male, age 76, right hemisphere 51.4
1904 Male, age 53, unknown 50.9
2503 Female, age 72, unknown 50.7
1954 Female, age 42, unknown 50.5
Substantia nigra
nTPM: 54.1
1889 Female, age 72, unknown 71.9
1941 Male, age 53, unknown 63.3
2583 Male, age 75, right hemisphere 61.6
1916 Female, age 42, unknown 59.7
1851 Male, age 51, unknown 55.9
2409 Female, age 72, unknown 49.9
2699 Male, age 18, unknown 49.7
2590 Female, age 75, unknown 47.7
2241 Male, age 72, unknown 47.3
2665 Male, age 74, both hemispheres 33.6
Superior colliculus
nTPM: 55.0
2087 Female, age 72, unknown 67.2
2261 Male, age 18, unknown 66.0
1913 Female, age 42, unknown 64.9
2668 Female, age 75, unknown 56.9
2587 Male, age 74, left hemisphere 56.1
1796 Male, age 53, unknown 55.9
1995 Male, age 72, unknown 53.5
1895 Male, age 76, right hemisphere 47.5
1839 Male, age 51, unknown 42.7
2664 Male, age 75, both hemispheres 39.3
Ventral tegmental area
nTPM: 53.9
2223 Female, age 72, unknown 69.3
2410 Female, age 72, unknown 65.9
2218 Male, age 76, both hemispheres 65.4
1915 Female, age 42, unknown 44.7
2021 Male, age 53, unknown 39.3
1942 Male, age 51, unknown 38.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.5
Samples: 139

Max nTPM: 142.7
Min nTPM: 27.9
Std nTPM: 20.6
Median nTPM: 67.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 142.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 141.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 124.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 120.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 118.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 114.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 111.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 110.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 106.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 105.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 103.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 190.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 190.7
FF:10158-103A5 76 years, female 190.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 227.4
Pig sample Sample description nTPM
Midbrain
nTPM: 227.4
Samples: 4

Max nTPM: 332.8
Min nTPM: 157.5
Sample A Female 332.8
Sample B Female 157.5
Sample C Male 261.8
Sample D Male 157.6
Periaqueductal gray
nTPM: 142.2
Samples: 3

Max nTPM: 146.6
Min nTPM: 134.8
Sample B Female 145.3
Sample C Male 146.6
Sample D Male 134.8
Substantia nigra
nTPM: 172.2
Samples: 4

Max nTPM: 199.2
Min nTPM: 127.2
Sample A Female 190.9
Sample B Female 127.2
Sample C Male 171.6
Sample D Male 199.2
Superior colliculi
nTPM: 181.3
Samples: 4

Max nTPM: 229.5
Min nTPM: 115.6
Sample A Female 177.8
Sample B Female 115.6
Sample C Male 229.5
Sample D Male 202.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 170.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 170.7
Samples: 4

Max nTPM: 177.8
Min nTPM: 158.9
Sample A Male 158.9
Sample B Male 177.2
Sample C Female 177.8
Sample D Female 168.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.0
659 Antisense, RP_040324_01_E10, Mouse strain C57BL/6J (56 days, male) 10.0
660 Antisense, RP_040324_01_E10, Mouse strain C57BL/6J (56 days, male) 7.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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