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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:42.2 nTPM
HPA:42.2 nTPM
GTEx:72.7 nTPM
FANTOM5:17.1 Scaled Tags Per Million
Pig:60.6 nTPM
Mouse:149.4 nTPM
Allen mouse:3.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003280
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.3
2481 Female, age 94, left hemisphere 44.1
1857 Female, age 85, left hemisphere 43.6
2288 Male, age 75, left hemisphere 42.2
2846 Female, age 79, unknown 42.2
2290 Female, age 72, unknown 41.3
2289 Male, age 61, right hemisphere 39.9
1854 Male, age 80, left hemisphere 39.8
1781 Male, age 74, unknown 37.0
Claustrum
nTPM: 38.5
2196 Female, age 79, unknown 40.5
2292 Female, age 85, both hemispheres 40.5
1956 Male, age 74, unknown 38.6
2392 Female, age 94, both hemispheres 38.6
2645 Female, age 72, unknown 38.5
2198 Male, age 80, both hemispheres 38.1
2568 Male, age 61, both hemispheres 37.7
2491 Male, age 75, both hemispheres 37.2
2284 Female, age 91, both hemispheres 36.6
Globus pallidus, externus
nTPM: 41.0
1996 Male, age 80, right hemisphere 46.4
2772 Female, age 79, unknown 43.1
2646 Male, age 61, right hemisphere 39.6
2395 Male, age 75, both hemispheres 39.2
2567 Female, age 72, unknown 36.6
Globus pallidus, internus
nTPM: 42.2
2778 Female, age 91, both hemispheres 46.3
2111 Female, age 85, right hemisphere 44.0
1818 Male, age 74, unknown 42.2
2287 Male, age 75, right hemisphere 42.1
2037 Male, age 80, right hemisphere 41.5
2483 Female, age 94, right hemisphere 40.0
2566 Female, age 72, unknown 39.3
Nucleus accumbens
nTPM: 41.5
2286 Male, age 75, left hemisphere 45.2
2698 Female, age 72, unknown 43.1
1783 Male, age 74, unknown 41.9
1806 Female, age 85, left hemisphere 41.9
2391 Female, age 94, left hemisphere 40.4
2824 Male, age 61, right hemisphere 40.3
2732 Male, age 80, right hemisphere 39.9
1856 Female, age 91, right hemisphere 39.3
Nucleus basalis of Meynert
nTPM: 39.7
2821 Male, age 75, both hemispheres 40.8
2569 Male, age 61, both hemispheres 40.4
2393 Male, age 80, right hemisphere 38.9
2484 Female, age 94, left hemisphere 38.6
Nucleus of the diagonal band
nTPM: 38.6
1979 Male, age 74, unknown 39.6
2775 Male, age 80, right hemisphere 39.4
1812 Female, age 91, both hemispheres 39.0
2195 Female, age 85, both hemispheres 38.2
2029 Male, age 61, right hemisphere 36.7
Olfactory tubercle
nTPM: 38.7
2856 Male, age 75, right hemisphere 39.4
2487 Female, age 94, left hemisphere 38.6
1846 Male, age 80, right hemisphere 38.4
1998 Female, age 91, both hemispheres 38.3
Putamen
nTPM: 39.5
2482 Female, age 94, left hemisphere 44.1
2647 Male, age 75, left hemisphere 40.0
2489 Female, age 72, unknown 39.5
2466 Female, age 79, unknown 38.8
1829 Male, age 74, unknown 38.4
1838 Male, age 80, right hemisphere 38.3
1937 Female, age 91, right hemisphere 37.6
Septal nuclei
nTPM: 39.3
2394 Male, age 61, left hemisphere 42.3
2199 Male, age 80, right hemisphere 41.4
1960 Male, age 74, unknown 40.1
2629 Female, age 94, right hemisphere 39.7
2031 Female, age 72, unknown 37.8
2009 Female, age 91, both hemispheres 37.4
2059 Female, age 85, both hemispheres 36.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 72.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 67.2
Samples: 246

Max nTPM: 117.5
Min nTPM: 41.3
Std nTPM: 13.1
Median nTPM: 65.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 117.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 111.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 111.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 108.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 107.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 106.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 105.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 104.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 96.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 95.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 93.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 67.7
Samples: 246

Max nTPM: 163.0
Min nTPM: 43.9
Std nTPM: 14.8
Median nTPM: 65.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 163.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 120.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 117.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 114.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 110.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 109.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 103.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 103.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 102.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 100.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 99.5
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Brain - Putamen (basal ganglia)
Average nTPM: 72.7
Samples: 205

Max nTPM: 113.5
Min nTPM: 46.2
Std nTPM: 12.9
Median nTPM: 71.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 113.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 110.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 106.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 106.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 104.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 104.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 104.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 103.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 100.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 99.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 96.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 17.1
FF:10164-103B2 76 years, female 17.1
Globus pallidus
Scaled Tags Per Million: 13.4
FF:10161-103A8 76 years, female 19.8
FF:10175-103C4 60 years, female 7.1
Nucleus accumbens
Scaled Tags Per Million: 13.5
FF:10037-101F1 23-56 years, mixed 13.5
Putamen
Scaled Tags Per Million: 16.0
FF:10176-103C5 60 years, female 16.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 60.6
Pig sample Sample description nTPM
Caudate
nTPM: 53.6
Samples: 4

Max nTPM: 62.2
Min nTPM: 45.4
Sample A Female 45.4
Sample B Female 59.1
Sample C Male 62.2
Sample D Male 47.6
Putamen
nTPM: 60.6
Samples: 4

Max nTPM: 71.2
Min nTPM: 50.4
Sample A Female 58.9
Sample B Female 50.4
Sample C Male 71.2
Sample D Male 62.0
Septum
nTPM: 54.1
Samples: 4

Max nTPM: 60.9
Min nTPM: 46.8
Sample A Female 57.0
Sample B Female 51.8
Sample C Male 60.9
Sample D Male 46.8
Ventral pallidum
nTPM: 52.8
Samples: 4

Max nTPM: 61.4
Min nTPM: 46.1
Sample A Female 46.1
Sample B Female 57.4
Sample C Male 61.4
Sample D Male 46.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 149.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 126.1
Samples: 4

Max nTPM: 129.8
Min nTPM: 119.4
Sample A Male 129.8
Sample B Male 128.0
Sample C Female 119.4
Sample D Female 127.3
Septum
nTPM: 149.5
Samples: 4

Max nTPM: 160.7
Min nTPM: 144.1
Sample A Male 144.1
Sample B Male 148.0
Sample C Female 160.7
Sample D Female 145.0
Ventral forebrain
nTPM: 140.0
Samples: 4

Max nTPM: 151.7
Min nTPM: 119.6
Sample A Male 119.6
Sample B Male 145.1
Sample C Female 151.7
Sample D Female 143.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.9
69783071 Antisense, RP_050505_04_C10, Mouse strain C57BL/6J (56 days, male) 1.9
Pallidum
Expression energy: 3.0
69783071 Antisense, RP_050505_04_C10, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

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