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CACNB3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.2 nTPM
HPA:56.2 nTPM
GTEx:24.2 nTPM
FANTOM5:1.5 Scaled Tags Per Million
Pig:17.9 nTPM
Mouse:33.4 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.1
2219 Male, age 76, both hemispheres 56.9
1827 Male, age 72, unknown 49.4
2828 Female, age 72, unknown 49.4
2666 Male, age 74, left hemisphere 48.8
1833 Male, age 53, unknown 48.4
2411 Female, age 72, unknown 48.1
1870 Female, age 42, unknown 47.9
2586 Male, age 75, left hemisphere 47.8
1830 Male, age 51, unknown 47.3
2019 Male, age 18, unknown 46.8
Dorsal raphe nucleus
nTPM: 49.4
2047 Male, age 72, unknown 51.1
2298 Female, age 72, unknown 50.8
2750 Male, age 76, both hemispheres 49.8
1828 Male, age 53, unknown 47.9
2016 Female, age 72, unknown 47.6
Inferior colliculus
nTPM: 50.6
1848 Female, age 42, unknown 53.8
2097 Female, age 72, unknown 50.1
2849 Male, age 72, unknown 49.7
1890 Male, age 53, unknown 49.1
Median raphe nucleus
nTPM: 53.5
2220 Male, age 76, midline 53.5
Pedunculopontine tegmental nucleus
nTPM: 48.0
1921 Female, age 85, both hemispheres 50.4
2334 Male, age 80, both hemispheres 48.5
2338 Male, age 61, both hemispheres 45.0
Periaquaductal grey, anterior
nTPM: 51.1
2502 Female, age 75, unknown 56.3
1795 Male, age 51, unknown 48.6
1947 Male, age 18, unknown 48.6
Periaquaductal grey, dorsal
nTPM: 54.1
1831 Male, age 72, unknown 64.9
1840 Male, age 53, unknown 54.2
2464 Female, age 72, unknown 48.9
2850 Male, age 76, both hemispheres 48.3
Periaquaductal grey, lateral
nTPM: 48.6
2053 Male, age 18, unknown 50.3
2140 Male, age 76, both hemispheres 49.2
2272 Male, age 74, both hemispheres 46.4
Pretectal area
nTPM: 48.9
2316 Male, age 76, right hemisphere 51.2
1816 Male, age 51, unknown 51.1
2825 Male, age 18, unknown 50.7
2224 Female, age 72, unknown 49.6
1817 Female, age 42, unknown 49.4
1815 Male, age 53, unknown 49.2
1944 Female, age 72, unknown 48.1
2407 Male, age 75, both hemispheres 47.9
2007 Male, age 72, unknown 47.6
2667 Female, age 75, unknown 47.3
2273 Male, age 74, both hemispheres 45.9
Red nucleus
nTPM: 46.3
2584 Male, age 75, left hemisphere 47.8
2503 Female, age 72, unknown 47.7
1904 Male, age 53, unknown 47.4
1954 Female, age 42, unknown 46.3
2588 Male, age 74, left hemisphere 46.3
2823 Male, age 76, right hemisphere 46.3
2725 Female, age 75, unknown 46.2
2785 Male, age 18, unknown 45.9
2769 Male, age 72, unknown 45.7
2227 Male, age 72, unknown 45.6
1821 Female, age 72, unknown 45.5
1865 Male, age 51, unknown 45.1
Substantia nigra
nTPM: 56.2
1916 Female, age 42, unknown 71.4
1851 Male, age 51, unknown 59.6
2699 Male, age 18, unknown 58.5
2665 Male, age 74, both hemispheres 57.0
2241 Male, age 72, unknown 55.9
2409 Female, age 72, unknown 55.1
1941 Male, age 53, unknown 52.7
2583 Male, age 75, right hemisphere 50.9
1889 Female, age 72, unknown 50.7
2590 Female, age 75, unknown 49.9
Superior colliculus
nTPM: 49.7
1796 Male, age 53, unknown 52.4
1895 Male, age 76, right hemisphere 51.6
1839 Male, age 51, unknown 51.5
2668 Female, age 75, unknown 51.4
2087 Female, age 72, unknown 51.1
2664 Male, age 75, both hemispheres 50.5
2261 Male, age 18, unknown 48.7
2587 Male, age 74, left hemisphere 47.8
1913 Female, age 42, unknown 45.9
1995 Male, age 72, unknown 45.8
Ventral tegmental area
nTPM: 54.0
1915 Female, age 42, unknown 55.7
2223 Female, age 72, unknown 54.7
2410 Female, age 72, unknown 54.7
2218 Male, age 76, both hemispheres 53.4
1942 Male, age 51, unknown 52.8
2021 Male, age 53, unknown 52.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.2
Samples: 139

Max nTPM: 75.8
Min nTPM: 1.4
Std nTPM: 17.7
Median nTPM: 20.3
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 75.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 72.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 71.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 67.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 67.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 66.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 63.7
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 63.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 61.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 60.1
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 59.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.5
FF:10158-103A5 76 years, female 1.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.9
Pig sample Sample description nTPM
Midbrain
nTPM: 16.5
Samples: 4

Max nTPM: 30.9
Min nTPM: 8.3
Sample A Female 8.3
Sample B Female 13.6
Sample C Male 13.3
Sample D Male 30.9
Periaqueductal gray
nTPM: 11.8
Samples: 3

Max nTPM: 16.2
Min nTPM: 9.3
Sample B Female 9.3
Sample C Male 16.2
Sample D Male 9.9
Substantia nigra
nTPM: 18.0
Samples: 4

Max nTPM: 27.6
Min nTPM: 3.6
Sample A Female 27.6
Sample B Female 13.4
Sample C Male 27.2
Sample D Male 3.6
Superior colliculi
nTPM: 15.3
Samples: 4

Max nTPM: 23.2
Min nTPM: 7.2
Sample A Female 23.2
Sample B Female 8.5
Sample C Male 7.2
Sample D Male 22.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.4
Samples: 4

Max nTPM: 36.5
Min nTPM: 31.0
Sample A Male 36.5
Sample B Male 31.0
Sample C Female 32.2
Sample D Female 33.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
69236939 Antisense, RP_050331_01_E04, Mouse strain C57BL/6J (56 days, male) 5.8
70560340 Antisense, RP_050331_01_E04, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.