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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:72.3 nTPM
HPA:72.3 nTPM
GTEx:121.8 nTPM
FANTOM5:60.6 Scaled Tags Per Million
Pig:33.2 nTPM
Mouse:53.3 nTPM
Allen mouse:4.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040906Antibody HPA041313
Glial cells Not detectedLow
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 72.3
Sample id Sample description nTPM
Hippocampus
nTPM: 70.6
2621 Female, age 67, right hemisphere 76.6
1898 Male, age 80, left hemisphere 76.3
2529 Female, age 94, left hemisphere 72.6
2148 Female, age 91, left hemisphere 71.4
1855 Male, age 76, left hemisphere 68.2
1911 Female, age 85, right hemisphere 58.7
Dentate gyrus
nTPM: 71.1
2530 Female, age 94, left hemisphere 100.2
1927 Female, age 91, both hemispheres 75.0
2531 Female, age 67, both hemispheres 72.5
2010 Male, age 76, both hemispheres 67.4
2528 Male, age 74, both hemispheres 56.0
2246 Female, age 85, both hemispheres 55.4
Entorhinal gyrus
nTPM: 63.0
2764 Male, age 80, right hemisphere 68.1
1787 Male, age 76, left hemisphere 63.8
1938 Female, age 85, left hemisphere 63.8
2613 Female, age 94, left hemisphere 63.7
2686 Male, age 75, right hemisphere 63.1
2117 Female, age 91, right hemisphere 55.6
Hippocampus, CA1
nTPM: 67.6
2749 Male, age 80, left hemisphere 91.9
1873 Female, age 85, both hemispheres 70.7
2045 Male, age 76, both hemispheres 64.5
2527 Male, age 74, both hemispheres 60.8
2082 Female, age 91, right hemisphere 50.2
Hippocampus, CA2
nTPM: 67.1
1963 Male, age 80, left hemisphere 93.5
2437 Female, age 94, left hemisphere 82.5
1892 Male, age 76, both hemispheres 69.9
2113 Female, age 91, right hemisphere 54.0
1940 Female, age 85, left hemisphere 52.4
2249 Male, age 74, both hemispheres 50.3
Hippocampus, CA3
nTPM: 72.3
2620 Female, age 94, left hemisphere 95.7
2861 Female, age 67, both hemispheres 86.8
2137 Male, age 80, left hemisphere 74.3
1867 Male, age 76, both hemispheres 62.4
2436 Male, age 74, both hemispheres 60.9
1891 Female, age 85, both hemispheres 53.5
Parahippocampal cortex
nTPM: 59.3
2245 Female, age 91, both hemispheres 71.8
2622 Female, age 67, right hemisphere 64.0
1933 Female, age 85, both hemispheres 59.4
1850 Male, age 80, both hemispheres 59.1
2692 Male, age 74, both hemispheres 58.6
1990 Female, age 91, right hemisphere 58.3
2532 Female, age 72, left hemisphere 57.8
2250 Female, age 67, right hemisphere 57.2
2018 Male, age 76, both hemispheres 54.1
2693 Female, age 94, both hemispheres 52.4
Perirhinal gyrus
nTPM: 61.9
1847 Female, age 91, left hemisphere 68.8
1794 Male, age 80, right hemisphere 68.5
2521 Female, age 94, right hemisphere 59.6
1841 Female, age 85, right hemisphere 56.4
2848 Male, age 76, right hemisphere 56.4
Subiculum
nTPM: 57.5
2438 Female, age 94, left hemisphere 61.6
1977 Female, age 85, both hemispheres 59.6
2619 Male, age 74, both hemispheres 59.5
1901 Male, age 80, both hemispheres 58.6
2729 Female, age 91, right hemisphere 54.2
2042 Male, age 76, both hemispheres 51.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 121.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 121.8
Samples: 197

Max nTPM: 223.5
Min nTPM: 39.8
Std nTPM: 37.1
Median nTPM: 123.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 223.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 209.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 207.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 202.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 199.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 197.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 197.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 195.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 192.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 188.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 186.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 60.6
FF:10169-103B7 60 years, female 62.7
FF:10153-102I9 76 years, female 58.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 33.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 33.2
Samples: 4

Max nTPM: 43.5
Min nTPM: 24.1
Sample A Female 43.5
Sample B Female 31.5
Sample C Male 33.5
Sample D Male 24.1
Entorhinal cortex
nTPM: 31.1
Samples: 4

Max nTPM: 36.2
Min nTPM: 25.5
Sample A Female 28.9
Sample B Female 36.2
Sample C Male 33.9
Sample D Male 25.5
Subiculum
nTPM: 27.8
Samples: 4

Max nTPM: 37.2
Min nTPM: 22.8
Sample A Female 37.2
Sample B Female 26.4
Sample C Male 24.8
Sample D Male 22.8
Ventral hippocampus
nTPM: 30.7
Samples: 4

Max nTPM: 36.2
Min nTPM: 23.0
Sample A Female 28.7
Sample B Female 23.0
Sample C Male 36.2
Sample D Male 34.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 53.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 51.2
Samples: 4

Max nTPM: 54.9
Min nTPM: 49.4
Sample A Male 49.4
Sample B Male 54.9
Sample C Female 50.3
Sample D Female 50.1
Hippocampal formation
nTPM: 53.3
Samples: 4

Max nTPM: 59.1
Min nTPM: 48.2
Sample A Male 59.1
Sample B Male 48.2
Sample C Female 52.7
Sample D Female 53.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.3
69015440 Antisense, RP_050315_01_A04, Mouse strain C57BL/6J (56 days, male) 4.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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