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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.8 nTPM
HPA:64.8 nTPM
GTEx:100.6 nTPM
FANTOM5:27.6 Scaled Tags Per Million
Pig:43.9 nTPM
Mouse:34.6 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.8
2586 Male, age 75, left hemisphere 73.9
2666 Male, age 74, left hemisphere 59.3
2828 Female, age 72, unknown 56.9
2219 Male, age 76, both hemispheres 56.5
1827 Male, age 72, unknown 52.9
2019 Male, age 18, unknown 49.9
1870 Female, age 42, unknown 47.9
2411 Female, age 72, unknown 47.5
1833 Male, age 53, unknown 47.1
1830 Male, age 51, unknown 46.4
Dorsal raphe nucleus
nTPM: 51.0
1828 Male, age 53, unknown 55.4
2047 Male, age 72, unknown 55.0
2298 Female, age 72, unknown 50.9
2016 Female, age 72, unknown 47.3
2750 Male, age 76, both hemispheres 46.3
Inferior colliculus
nTPM: 45.9
2849 Male, age 72, unknown 46.8
1848 Female, age 42, unknown 46.0
2097 Female, age 72, unknown 45.8
1890 Male, age 53, unknown 45.2
Median raphe nucleus
nTPM: 52.5
2220 Male, age 76, midline 52.5
Pedunculopontine tegmental nucleus
nTPM: 48.8
1921 Female, age 85, both hemispheres 51.1
2334 Male, age 80, both hemispheres 49.3
2338 Male, age 61, both hemispheres 46.0
Periaquaductal grey, anterior
nTPM: 58.1
1795 Male, age 51, unknown 59.2
1947 Male, age 18, unknown 58.6
2502 Female, age 75, unknown 56.6
Periaquaductal grey, dorsal
nTPM: 44.8
1840 Male, age 53, unknown 48.9
1831 Male, age 72, unknown 44.3
2850 Male, age 76, both hemispheres 44.2
2464 Female, age 72, unknown 41.6
Periaquaductal grey, lateral
nTPM: 43.2
2053 Male, age 18, unknown 44.1
2140 Male, age 76, both hemispheres 43.3
2272 Male, age 74, both hemispheres 42.1
Pretectal area
nTPM: 50.5
2007 Male, age 72, unknown 57.2
1817 Female, age 42, unknown 56.0
1816 Male, age 51, unknown 55.5
1944 Female, age 72, unknown 54.0
2667 Female, age 75, unknown 53.1
1815 Male, age 53, unknown 51.6
2407 Male, age 75, both hemispheres 50.7
2825 Male, age 18, unknown 50.2
2224 Female, age 72, unknown 44.6
2273 Male, age 74, both hemispheres 42.2
2316 Male, age 76, right hemisphere 40.9
Red nucleus
nTPM: 50.8
2584 Male, age 75, left hemisphere 57.6
1821 Female, age 72, unknown 53.3
2769 Male, age 72, unknown 52.8
2227 Male, age 72, unknown 52.6
2503 Female, age 72, unknown 52.2
2588 Male, age 74, left hemisphere 51.0
2725 Female, age 75, unknown 51.0
2785 Male, age 18, unknown 50.7
1954 Female, age 42, unknown 49.8
1865 Male, age 51, unknown 48.9
1904 Male, age 53, unknown 47.2
2823 Male, age 76, right hemisphere 42.7
Substantia nigra
nTPM: 64.8
2665 Male, age 74, both hemispheres 86.1
1916 Female, age 42, unknown 81.8
1851 Male, age 51, unknown 72.2
2699 Male, age 18, unknown 65.6
1941 Male, age 53, unknown 65.1
2583 Male, age 75, right hemisphere 60.4
2409 Female, age 72, unknown 57.0
1889 Female, age 72, unknown 54.3
2241 Male, age 72, unknown 53.4
2590 Female, age 75, unknown 51.8
Superior colliculus
nTPM: 50.9
2664 Male, age 75, both hemispheres 66.2
2668 Female, age 75, unknown 59.6
1796 Male, age 53, unknown 55.5
2087 Female, age 72, unknown 51.2
2261 Male, age 18, unknown 50.5
2587 Male, age 74, left hemisphere 47.1
1839 Male, age 51, unknown 46.4
1995 Male, age 72, unknown 44.8
1913 Female, age 42, unknown 43.8
1895 Male, age 76, right hemisphere 43.5
Ventral tegmental area
nTPM: 56.0
1915 Female, age 42, unknown 64.1
2410 Female, age 72, unknown 58.3
1942 Male, age 51, unknown 56.9
2218 Male, age 76, both hemispheres 56.6
2223 Female, age 72, unknown 50.5
2021 Male, age 53, unknown 49.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 100.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 100.6
Samples: 139

Max nTPM: 191.3
Min nTPM: 47.7
Std nTPM: 27.8
Median nTPM: 96.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 191.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 184.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 175.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 162.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 155.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 155.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 151.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 151.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 149.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 142.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 140.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.6
FF:10158-103A5 76 years, female 27.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.9
Pig sample Sample description nTPM
Midbrain
nTPM: 43.9
Samples: 4

Max nTPM: 57.3
Min nTPM: 34.1
Sample A Female 57.3
Sample B Female 41.5
Sample C Male 42.6
Sample D Male 34.1
Periaqueductal gray
nTPM: 32.0
Samples: 3

Max nTPM: 34.2
Min nTPM: 28.6
Sample B Female 34.2
Sample C Male 33.3
Sample D Male 28.6
Substantia nigra
nTPM: 37.8
Samples: 4

Max nTPM: 46.8
Min nTPM: 30.9
Sample A Female 46.8
Sample B Female 30.9
Sample C Male 38.2
Sample D Male 35.4
Superior colliculi
nTPM: 42.5
Samples: 4

Max nTPM: 50.1
Min nTPM: 32.8
Sample A Female 45.7
Sample B Female 32.8
Sample C Male 50.1
Sample D Male 41.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.7
Samples: 4

Max nTPM: 39.5
Min nTPM: 30.0
Sample A Male 39.5
Sample B Male 30.0
Sample C Female 32.8
Sample D Female 36.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
69015440 Antisense, RP_050315_01_A04, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.