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HSD11B1L
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.7 nTPM
HPA:46.7 nTPM
GTEx:45.2 nTPM
FANTOM5:50.7 Scaled Tags Per Million
Pig:29.4 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 46.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.9
1781 Male, age 74, unknown 39.4
2288 Male, age 75, left hemisphere 37.6
2290 Female, age 72, unknown 37.2
2289 Male, age 61, right hemisphere 36.6
1854 Male, age 80, left hemisphere 36.5
1857 Female, age 85, left hemisphere 36.5
2846 Female, age 79, unknown 36.5
2481 Female, age 94, left hemisphere 34.7
Claustrum
nTPM: 43.6
2645 Female, age 72, unknown 51.2
2284 Female, age 91, both hemispheres 49.2
2491 Male, age 75, both hemispheres 46.7
2568 Male, age 61, both hemispheres 45.2
2198 Male, age 80, both hemispheres 44.6
1956 Male, age 74, unknown 42.1
2292 Female, age 85, both hemispheres 38.4
2392 Female, age 94, both hemispheres 38.1
2196 Female, age 79, unknown 37.3
Globus pallidus, externus
nTPM: 32.4
2567 Female, age 72, unknown 33.3
2646 Male, age 61, right hemisphere 33.2
2772 Female, age 79, unknown 32.3
1996 Male, age 80, right hemisphere 32.0
2395 Male, age 75, both hemispheres 31.3
Globus pallidus, internus
nTPM: 31.7
2483 Female, age 94, right hemisphere 35.0
1818 Male, age 74, unknown 32.3
2287 Male, age 75, right hemisphere 31.9
2778 Female, age 91, both hemispheres 31.5
2566 Female, age 72, unknown 31.3
2111 Female, age 85, right hemisphere 30.2
2037 Male, age 80, right hemisphere 29.6
Nucleus accumbens
nTPM: 35.9
1856 Female, age 91, right hemisphere 38.9
1783 Male, age 74, unknown 38.2
2286 Male, age 75, left hemisphere 38.0
1806 Female, age 85, left hemisphere 37.0
2824 Male, age 61, right hemisphere 36.5
2732 Male, age 80, right hemisphere 34.5
2698 Female, age 72, unknown 32.7
2391 Female, age 94, left hemisphere 31.3
Nucleus basalis of Meynert
nTPM: 34.8
2484 Female, age 94, left hemisphere 35.8
2393 Male, age 80, right hemisphere 34.7
2821 Male, age 75, both hemispheres 34.7
2569 Male, age 61, both hemispheres 33.8
Nucleus of the diagonal band
nTPM: 44.8
2029 Male, age 61, right hemisphere 49.8
2775 Male, age 80, right hemisphere 47.3
2195 Female, age 85, both hemispheres 44.8
1812 Female, age 91, both hemispheres 44.1
1979 Male, age 74, unknown 37.8
Olfactory tubercle
nTPM: 46.7
1998 Female, age 91, both hemispheres 49.7
2487 Female, age 94, left hemisphere 47.4
2856 Male, age 75, right hemisphere 47.2
1846 Male, age 80, right hemisphere 42.6
Putamen
nTPM: 37.2
2466 Female, age 79, unknown 40.0
2489 Female, age 72, unknown 38.5
2647 Male, age 75, left hemisphere 38.4
1937 Female, age 91, right hemisphere 36.9
1838 Male, age 80, right hemisphere 36.7
1829 Male, age 74, unknown 35.4
2482 Female, age 94, left hemisphere 34.2
Septal nuclei
nTPM: 42.5
1960 Male, age 74, unknown 51.8
2009 Female, age 91, both hemispheres 45.1
2031 Female, age 72, unknown 44.6
2059 Female, age 85, both hemispheres 42.9
2629 Female, age 94, right hemisphere 41.7
2394 Male, age 61, left hemisphere 37.8
2199 Male, age 80, right hemisphere 33.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 45.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.8
Samples: 246

Max nTPM: 92.9
Min nTPM: 11.4
Std nTPM: 11.5
Median nTPM: 39.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 92.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 77.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 77.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 71.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 71.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 67.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 65.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 65.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 64.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 64.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 63.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 45.2
Samples: 246

Max nTPM: 99.5
Min nTPM: 6.0
Std nTPM: 13.7
Median nTPM: 44.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 99.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 97.4
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 90.1
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 76.9
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 76.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 74.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 73.9
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 71.8
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 70.8
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 70.4
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 70.2
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Brain - Putamen (basal ganglia)
Average nTPM: 44.1
Samples: 205

Max nTPM: 79.6
Min nTPM: 13.3
Std nTPM: 11.5
Median nTPM: 43.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 79.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 76.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 71.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 68.8
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 68.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 68.2
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 66.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 65.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 64.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 64.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 63.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.1
FF:10164-103B2 76 years, female 31.1
Globus pallidus
Scaled Tags Per Million: 21.0
FF:10175-103C4 60 years, female 21.3
FF:10161-103A8 76 years, female 20.7
Nucleus accumbens
Scaled Tags Per Million: 50.7
FF:10037-101F1 23-56 years, mixed 50.7
Putamen
Scaled Tags Per Million: 38.8
FF:10176-103C5 60 years, female 38.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 29.4
Pig sample Sample description nTPM
Caudate
nTPM: 25.7
Samples: 4

Max nTPM: 29.8
Min nTPM: 21.8
Sample A Female 23.6
Sample B Female 27.7
Sample C Male 29.8
Sample D Male 21.8
Putamen
nTPM: 29.4
Samples: 4

Max nTPM: 32.7
Min nTPM: 23.5
Sample A Female 32.7
Sample B Female 23.5
Sample C Male 31.8
Sample D Male 29.6
Septum
nTPM: 29.3
Samples: 4

Max nTPM: 34.1
Min nTPM: 25.8
Sample A Female 34.1
Sample B Female 28.7
Sample C Male 25.8
Sample D Male 28.4
Ventral pallidum
nTPM: 26.6
Samples: 4

Max nTPM: 31.3
Min nTPM: 22.8
Sample A Female 25.3
Sample B Female 31.3
Sample C Male 22.8
Sample D Male 26.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.