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HSD11B1L
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.5 nTPM
HPA:36.5 nTPM
GTEx:27.9 nTPM
FANTOM5:14.4 Scaled Tags Per Million
Pig:34.2 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.5
1827 Male, age 72, unknown 37.1
2828 Female, age 72, unknown 36.5
2219 Male, age 76, both hemispheres 35.9
2586 Male, age 75, left hemisphere 35.5
1870 Female, age 42, unknown 34.7
2411 Female, age 72, unknown 34.2
1833 Male, age 53, unknown 33.2
1830 Male, age 51, unknown 33.1
2019 Male, age 18, unknown 33.1
2666 Male, age 74, left hemisphere 32.1
Dorsal raphe nucleus
nTPM: 34.2
2298 Female, age 72, unknown 36.8
2750 Male, age 76, both hemispheres 34.6
2047 Male, age 72, unknown 34.4
1828 Male, age 53, unknown 32.7
2016 Female, age 72, unknown 32.6
Inferior colliculus
nTPM: 33.9
2097 Female, age 72, unknown 35.1
1890 Male, age 53, unknown 33.6
2849 Male, age 72, unknown 33.6
1848 Female, age 42, unknown 33.2
Median raphe nucleus
nTPM: 36.4
2220 Male, age 76, midline 36.4
Pedunculopontine tegmental nucleus
nTPM: 33.3
1921 Female, age 85, both hemispheres 35.5
2334 Male, age 80, both hemispheres 33.9
2338 Male, age 61, both hemispheres 30.5
Periaquaductal grey, anterior
nTPM: 36.5
1795 Male, age 51, unknown 37.1
2502 Female, age 75, unknown 36.6
1947 Male, age 18, unknown 35.8
Periaquaductal grey, dorsal
nTPM: 34.1
2464 Female, age 72, unknown 35.1
1840 Male, age 53, unknown 34.5
2850 Male, age 76, both hemispheres 34.3
1831 Male, age 72, unknown 32.7
Periaquaductal grey, lateral
nTPM: 34.3
2140 Male, age 76, both hemispheres 34.6
2053 Male, age 18, unknown 34.5
2272 Male, age 74, both hemispheres 33.9
Pretectal area
nTPM: 35.1
2007 Male, age 72, unknown 37.5
1816 Male, age 51, unknown 36.7
2224 Female, age 72, unknown 36.5
1944 Female, age 72, unknown 36.3
1817 Female, age 42, unknown 35.6
1815 Male, age 53, unknown 35.4
2825 Male, age 18, unknown 34.9
2407 Male, age 75, both hemispheres 34.2
2667 Female, age 75, unknown 34.1
2273 Male, age 74, both hemispheres 33.2
2316 Male, age 76, right hemisphere 32.2
Red nucleus
nTPM: 32.9
2725 Female, age 75, unknown 35.5
2588 Male, age 74, left hemisphere 35.2
2785 Male, age 18, unknown 34.3
2503 Female, age 72, unknown 33.7
2584 Male, age 75, left hemisphere 33.7
2769 Male, age 72, unknown 33.7
2227 Male, age 72, unknown 32.3
1954 Female, age 42, unknown 32.1
1904 Male, age 53, unknown 31.7
2823 Male, age 76, right hemisphere 31.2
1865 Male, age 51, unknown 30.8
1821 Female, age 72, unknown 30.2
Substantia nigra
nTPM: 33.5
2665 Male, age 74, both hemispheres 36.2
1941 Male, age 53, unknown 35.6
1851 Male, age 51, unknown 34.3
1889 Female, age 72, unknown 34.3
1916 Female, age 42, unknown 34.0
2583 Male, age 75, right hemisphere 32.9
2699 Male, age 18, unknown 32.7
2409 Female, age 72, unknown 32.4
2241 Male, age 72, unknown 31.6
2590 Female, age 75, unknown 31.3
Superior colliculus
nTPM: 33.9
1796 Male, age 53, unknown 37.0
2664 Male, age 75, both hemispheres 36.1
2087 Female, age 72, unknown 35.1
2261 Male, age 18, unknown 34.9
2668 Female, age 75, unknown 34.3
1895 Male, age 76, right hemisphere 33.2
1839 Male, age 51, unknown 32.7
1995 Male, age 72, unknown 32.4
1913 Female, age 42, unknown 32.2
2587 Male, age 74, left hemisphere 31.2
Ventral tegmental area
nTPM: 34.6
1942 Male, age 51, unknown 36.9
2218 Male, age 76, both hemispheres 35.7
1915 Female, age 42, unknown 34.9
2223 Female, age 72, unknown 34.6
2021 Male, age 53, unknown 33.1
2410 Female, age 72, unknown 32.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.9
Samples: 139

Max nTPM: 52.0
Min nTPM: 11.0
Std nTPM: 9.3
Median nTPM: 27.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 52.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 50.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 48.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 48.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 45.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 44.4
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 43.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 43.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 43.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 42.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.4
FF:10158-103A5 76 years, female 14.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.2
Pig sample Sample description nTPM
Midbrain
nTPM: 34.2
Samples: 4

Max nTPM: 49.1
Min nTPM: 22.7
Sample A Female 49.1
Sample B Female 36.6
Sample C Male 28.4
Sample D Male 22.7
Periaqueductal gray
nTPM: 29.1
Samples: 3

Max nTPM: 32.1
Min nTPM: 26.2
Sample B Female 29.0
Sample C Male 32.1
Sample D Male 26.2
Substantia nigra
nTPM: 34.2
Samples: 4

Max nTPM: 42.2
Min nTPM: 29.9
Sample A Female 42.2
Sample B Female 33.1
Sample C Male 31.6
Sample D Male 29.9
Superior colliculi
nTPM: 33.2
Samples: 4

Max nTPM: 39.0
Min nTPM: 31.0
Sample A Female 39.0
Sample B Female 31.6
Sample C Male 31.1
Sample D Male 31.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.