ABOUTMENU
HELP
NEWS
ARF4
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.5 nTPM
HPA:56.5 nTPM
GTEx:78.1 nTPM
FANTOM5:126.7 Scaled Tags Per Million
Pig:112.3 nTPM
Mouse:150.2 nTPM
Allen mouse:4.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 56.5
1857 Female, age 85, left hemisphere 59.9
2481 Female, age 94, left hemisphere 59.6
2846 Female, age 79, unknown 59.1
2288 Male, age 75, left hemisphere 56.6
1854 Male, age 80, left hemisphere 56.3
2290 Female, age 72, unknown 55.4
1781 Male, age 74, unknown 54.4
2289 Male, age 61, right hemisphere 50.7
Claustrum
nTPM: 50.4
2392 Female, age 94, both hemispheres 54.5
1956 Male, age 74, unknown 52.5
2196 Female, age 79, unknown 52.1
2491 Male, age 75, both hemispheres 51.2
2198 Male, age 80, both hemispheres 51.1
2292 Female, age 85, both hemispheres 50.0
2284 Female, age 91, both hemispheres 49.0
2568 Male, age 61, both hemispheres 46.6
2645 Female, age 72, unknown 46.4
Globus pallidus, externus
nTPM: 51.8
2395 Male, age 75, both hemispheres 57.5
2772 Female, age 79, unknown 56.3
1996 Male, age 80, right hemisphere 55.1
2646 Male, age 61, right hemisphere 46.3
2567 Female, age 72, unknown 43.9
Globus pallidus, internus
nTPM: 54.2
2287 Male, age 75, right hemisphere 59.8
2483 Female, age 94, right hemisphere 56.5
2778 Female, age 91, both hemispheres 55.8
1818 Male, age 74, unknown 54.4
2037 Male, age 80, right hemisphere 54.0
2111 Female, age 85, right hemisphere 52.2
2566 Female, age 72, unknown 46.6
Nucleus accumbens
nTPM: 56.3
1856 Female, age 91, right hemisphere 59.4
2286 Male, age 75, left hemisphere 58.8
1806 Female, age 85, left hemisphere 58.0
2391 Female, age 94, left hemisphere 57.6
2698 Female, age 72, unknown 57.0
1783 Male, age 74, unknown 54.7
2824 Male, age 61, right hemisphere 54.7
2732 Male, age 80, right hemisphere 50.3
Nucleus basalis of Meynert
nTPM: 52.0
2393 Male, age 80, right hemisphere 57.2
2821 Male, age 75, both hemispheres 53.3
2484 Female, age 94, left hemisphere 52.8
2569 Male, age 61, both hemispheres 44.8
Nucleus of the diagonal band
nTPM: 53.4
1812 Female, age 91, both hemispheres 57.7
2775 Male, age 80, right hemisphere 53.6
2195 Female, age 85, both hemispheres 52.6
2029 Male, age 61, right hemisphere 52.4
1979 Male, age 74, unknown 50.9
Olfactory tubercle
nTPM: 52.3
1846 Male, age 80, right hemisphere 54.2
2856 Male, age 75, right hemisphere 53.1
1998 Female, age 91, both hemispheres 52.6
2487 Female, age 94, left hemisphere 49.2
Putamen
nTPM: 53.5
1838 Male, age 80, right hemisphere 57.2
2466 Female, age 79, unknown 56.6
2482 Female, age 94, left hemisphere 56.6
1937 Female, age 91, right hemisphere 55.6
1829 Male, age 74, unknown 55.4
2489 Female, age 72, unknown 47.5
2647 Male, age 75, left hemisphere 45.8
Septal nuclei
nTPM: 52.1
2031 Female, age 72, unknown 58.6
2009 Female, age 91, both hemispheres 53.2
2629 Female, age 94, right hemisphere 52.8
1960 Male, age 74, unknown 52.3
2199 Male, age 80, right hemisphere 51.5
2394 Male, age 61, left hemisphere 48.6
2059 Female, age 85, both hemispheres 47.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 78.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 74.3
Samples: 246

Max nTPM: 134.2
Min nTPM: 45.7
Std nTPM: 14.7
Median nTPM: 72.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 134.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 127.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 125.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 122.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 114.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 112.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 111.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 110.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 108.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 104.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 103.3
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 78.1
Samples: 246

Max nTPM: 131.6
Min nTPM: 48.1
Std nTPM: 14.0
Median nTPM: 77.5
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 131.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 121.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 117.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 116.5
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 112.5
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 110.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 110.4
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 108.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 106.9
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 106.8
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 104.5
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 74.1
Samples: 205

Max nTPM: 131.3
Min nTPM: 46.7
Std nTPM: 13.8
Median nTPM: 72.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 131.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 130.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 109.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 109.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 104.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 102.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 101.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 101.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 99.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 99.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 98.0
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 93.2
FF:10164-103B2 76 years, female 93.2
Globus pallidus
Scaled Tags Per Million: 119.6
FF:10175-103C4 60 years, female 139.7
FF:10161-103A8 76 years, female 99.5
Nucleus accumbens
Scaled Tags Per Million: 126.7
FF:10037-101F1 23-56 years, mixed 126.7
Putamen
Scaled Tags Per Million: 98.5
FF:10176-103C5 60 years, female 98.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 112.3
Pig sample Sample description nTPM
Caudate
nTPM: 91.4
Samples: 4

Max nTPM: 104.2
Min nTPM: 82.8
Sample A Female 90.5
Sample B Female 82.8
Sample C Male 104.2
Sample D Male 88.0
Putamen
nTPM: 112.3
Samples: 4

Max nTPM: 149.5
Min nTPM: 87.4
Sample A Female 106.4
Sample B Female 87.4
Sample C Male 149.5
Sample D Male 105.8
Septum
nTPM: 98.5
Samples: 4

Max nTPM: 111.6
Min nTPM: 85.2
Sample A Female 111.6
Sample B Female 85.2
Sample C Male 104.7
Sample D Male 92.4
Ventral pallidum
nTPM: 93.7
Samples: 4

Max nTPM: 96.7
Min nTPM: 92.4
Sample A Female 92.4
Sample B Female 92.4
Sample C Male 93.4
Sample D Male 96.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 150.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 145.0
Samples: 4

Max nTPM: 161.5
Min nTPM: 130.4
Sample A Male 136.6
Sample B Male 130.4
Sample C Female 151.3
Sample D Female 161.5
Septum
nTPM: 150.2
Samples: 4

Max nTPM: 160.1
Min nTPM: 128.3
Sample A Male 128.3
Sample B Male 157.1
Sample C Female 155.2
Sample D Female 160.1
Ventral forebrain
nTPM: 132.7
Samples: 4

Max nTPM: 152.5
Min nTPM: 113.5
Sample A Male 113.5
Sample B Male 134.2
Sample C Female 152.5
Sample D Female 130.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.4
69526785 Antisense, RP_050421_01_F04, Mouse strain C57BL/6J (56 days, male) 4.4
Pallidum
Expression energy: 3.0
69526785 Antisense, RP_050421_01_F04, Mouse strain C57BL/6J (56 days, male) 3.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.