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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.3 nTPM
HPA:62.3 nTPM
GTEx:69.9 nTPM
FANTOM5:128.6 Scaled Tags Per Million
Pig:111.9 nTPM
Mouse:125.1 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.7
2411 Female, age 72, unknown 56.9
1870 Female, age 42, unknown 54.6
2019 Male, age 18, unknown 54.3
1833 Male, age 53, unknown 53.3
1830 Male, age 51, unknown 53.1
1827 Male, age 72, unknown 51.8
2219 Male, age 76, both hemispheres 50.1
2666 Male, age 74, left hemisphere 48.7
2828 Female, age 72, unknown 48.3
2586 Male, age 75, left hemisphere 45.6
Dorsal raphe nucleus
nTPM: 55.4
2750 Male, age 76, both hemispheres 57.6
2047 Male, age 72, unknown 56.9
2298 Female, age 72, unknown 56.9
1828 Male, age 53, unknown 53.3
2016 Female, age 72, unknown 52.2
Inferior colliculus
nTPM: 52.5
2097 Female, age 72, unknown 56.6
1890 Male, age 53, unknown 51.9
1848 Female, age 42, unknown 51.4
2849 Male, age 72, unknown 50.1
Median raphe nucleus
nTPM: 62.3
2220 Male, age 76, midline 62.3
Pedunculopontine tegmental nucleus
nTPM: 58.4
2338 Male, age 61, both hemispheres 60.4
2334 Male, age 80, both hemispheres 59.8
1921 Female, age 85, both hemispheres 55.1
Periaquaductal grey, anterior
nTPM: 52.1
1947 Male, age 18, unknown 53.8
2502 Female, age 75, unknown 52.4
1795 Male, age 51, unknown 50.1
Periaquaductal grey, dorsal
nTPM: 54.3
2850 Male, age 76, both hemispheres 60.0
1840 Male, age 53, unknown 53.4
2464 Female, age 72, unknown 52.7
1831 Male, age 72, unknown 51.1
Periaquaductal grey, lateral
nTPM: 54.4
2140 Male, age 76, both hemispheres 55.9
2272 Male, age 74, both hemispheres 55.9
2053 Male, age 18, unknown 51.5
Pretectal area
nTPM: 54.0
1817 Female, age 42, unknown 56.7
1944 Female, age 72, unknown 56.7
2007 Male, age 72, unknown 56.1
2224 Female, age 72, unknown 55.7
2273 Male, age 74, both hemispheres 55.5
1815 Male, age 53, unknown 55.1
1816 Male, age 51, unknown 53.4
2667 Female, age 75, unknown 52.8
2825 Male, age 18, unknown 51.8
2316 Male, age 76, right hemisphere 50.9
2407 Male, age 75, both hemispheres 49.1
Red nucleus
nTPM: 51.5
1821 Female, age 72, unknown 56.1
1954 Female, age 42, unknown 54.0
2785 Male, age 18, unknown 52.8
1904 Male, age 53, unknown 52.7
2725 Female, age 75, unknown 52.7
2823 Male, age 76, right hemisphere 52.5
1865 Male, age 51, unknown 51.9
2503 Female, age 72, unknown 51.1
2769 Male, age 72, unknown 49.9
2227 Male, age 72, unknown 49.4
2584 Male, age 75, left hemisphere 48.4
2588 Male, age 74, left hemisphere 46.7
Substantia nigra
nTPM: 52.9
2241 Male, age 72, unknown 59.7
1889 Female, age 72, unknown 56.4
1916 Female, age 42, unknown 54.9
1851 Male, age 51, unknown 53.6
1941 Male, age 53, unknown 52.9
2590 Female, age 75, unknown 50.9
2699 Male, age 18, unknown 50.9
2409 Female, age 72, unknown 50.7
2583 Male, age 75, right hemisphere 49.8
2665 Male, age 74, both hemispheres 49.3
Superior colliculus
nTPM: 51.2
1913 Female, age 42, unknown 53.3
2587 Male, age 74, left hemisphere 52.5
2668 Female, age 75, unknown 52.3
1839 Male, age 51, unknown 52.2
2087 Female, age 72, unknown 51.9
2261 Male, age 18, unknown 51.8
1895 Male, age 76, right hemisphere 51.7
1796 Male, age 53, unknown 50.8
1995 Male, age 72, unknown 50.4
2664 Male, age 75, both hemispheres 45.6
Ventral tegmental area
nTPM: 53.3
2410 Female, age 72, unknown 55.0
2218 Male, age 76, both hemispheres 54.1
1915 Female, age 42, unknown 53.6
2223 Female, age 72, unknown 53.3
2021 Male, age 53, unknown 52.1
1942 Male, age 51, unknown 51.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 69.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.9
Samples: 139

Max nTPM: 133.2
Min nTPM: 47.1
Std nTPM: 13.1
Median nTPM: 68.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 133.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 124.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 108.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 100.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 100.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 94.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 94.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 92.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 91.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 91.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 88.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.6
FF:10158-103A5 76 years, female 128.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 111.9
Pig sample Sample description nTPM
Midbrain
nTPM: 108.9
Samples: 4

Max nTPM: 135.8
Min nTPM: 95.5
Sample A Female 135.8
Sample B Female 101.4
Sample C Male 95.5
Sample D Male 102.8
Periaqueductal gray
nTPM: 90.9
Samples: 3

Max nTPM: 97.2
Min nTPM: 85.2
Sample B Female 85.2
Sample C Male 97.2
Sample D Male 90.4
Substantia nigra
nTPM: 102.5
Samples: 4

Max nTPM: 125.6
Min nTPM: 85.4
Sample A Female 125.6
Sample B Female 85.4
Sample C Male 100.5
Sample D Male 98.3
Superior colliculi
nTPM: 111.9
Samples: 4

Max nTPM: 129.1
Min nTPM: 98.9
Sample A Female 129.1
Sample B Female 98.9
Sample C Male 113.3
Sample D Male 106.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 125.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 125.1
Samples: 4

Max nTPM: 126.2
Min nTPM: 123.9
Sample A Male 125.2
Sample B Male 123.9
Sample C Female 124.9
Sample D Female 126.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
69526785 Antisense, RP_050421_01_F04, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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