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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:34.2 nTPM
HPA:34.2 nTPM
GTEx:28.3 nTPM
FANTOM5:34.9 Scaled Tags Per Million
Pig:15.6 nTPM
Mouse:63.1 nTPM
Allen mouse:8.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043137
Glial cells Low
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.2
Sample id Sample description nTPM
Hippocampus
nTPM: 33.3
2148 Female, age 91, left hemisphere 33.7
1855 Male, age 76, left hemisphere 33.6
1898 Male, age 80, left hemisphere 33.4
2529 Female, age 94, left hemisphere 33.2
2621 Female, age 67, right hemisphere 33.2
1911 Female, age 85, right hemisphere 32.7
Dentate gyrus
nTPM: 33.8
2010 Male, age 76, both hemispheres 34.8
2530 Female, age 94, left hemisphere 34.6
1927 Female, age 91, both hemispheres 34.2
2531 Female, age 67, both hemispheres 33.3
2246 Female, age 85, both hemispheres 33.1
2528 Male, age 74, both hemispheres 33.0
Entorhinal gyrus
nTPM: 34.0
2764 Male, age 80, right hemisphere 35.2
1787 Male, age 76, left hemisphere 34.8
1938 Female, age 85, left hemisphere 33.8
2117 Female, age 91, right hemisphere 33.7
2613 Female, age 94, left hemisphere 33.4
2686 Male, age 75, right hemisphere 32.9
Hippocampus, CA1
nTPM: 33.7
2749 Male, age 80, left hemisphere 34.8
2045 Male, age 76, both hemispheres 34.3
2082 Female, age 91, right hemisphere 33.9
1873 Female, age 85, both hemispheres 33.5
2527 Male, age 74, both hemispheres 31.9
Hippocampus, CA2
nTPM: 33.7
1892 Male, age 76, both hemispheres 35.6
2437 Female, age 94, left hemisphere 35.2
2113 Female, age 91, right hemisphere 34.1
1963 Male, age 80, left hemisphere 33.5
2249 Male, age 74, both hemispheres 33.0
1940 Female, age 85, left hemisphere 31.2
Hippocampus, CA3
nTPM: 34.2
2620 Female, age 94, left hemisphere 36.5
1867 Male, age 76, both hemispheres 34.4
2137 Male, age 80, left hemisphere 34.2
2861 Female, age 67, both hemispheres 33.9
1891 Female, age 85, both hemispheres 33.1
2436 Male, age 74, both hemispheres 33.0
Parahippocampal cortex
nTPM: 33.2
1850 Male, age 80, both hemispheres 34.7
2622 Female, age 67, right hemisphere 33.7
1933 Female, age 85, both hemispheres 33.6
2018 Male, age 76, both hemispheres 33.2
2250 Female, age 67, right hemisphere 33.1
2693 Female, age 94, both hemispheres 33.1
1990 Female, age 91, right hemisphere 33.0
2692 Male, age 74, both hemispheres 32.9
2532 Female, age 72, left hemisphere 32.3
2245 Female, age 91, both hemispheres 32.2
Perirhinal gyrus
nTPM: 33.8
1794 Male, age 80, right hemisphere 35.0
1847 Female, age 91, left hemisphere 34.3
2848 Male, age 76, right hemisphere 33.9
1841 Female, age 85, right hemisphere 33.5
2521 Female, age 94, right hemisphere 32.1
Subiculum
nTPM: 33.4
2619 Male, age 74, both hemispheres 34.6
2438 Female, age 94, left hemisphere 33.6
1977 Female, age 85, both hemispheres 33.5
2042 Male, age 76, both hemispheres 33.3
2729 Female, age 91, right hemisphere 32.8
1901 Male, age 80, both hemispheres 32.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 28.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 28.3
Samples: 197

Max nTPM: 50.6
Min nTPM: 18.0
Std nTPM: 4.4
Median nTPM: 28.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 50.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 42.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 38.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 38.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 37.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 37.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 36.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 36.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 35.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 35.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 34.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 34.9
FF:10169-103B7 60 years, female 39.7
FF:10153-102I9 76 years, female 30.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 15.6
Samples: 4

Max nTPM: 20.2
Min nTPM: 12.3
Sample A Female 20.2
Sample B Female 17.0
Sample C Male 12.8
Sample D Male 12.3
Entorhinal cortex
nTPM: 14.3
Samples: 4

Max nTPM: 15.4
Min nTPM: 13.2
Sample A Female 14.9
Sample B Female 13.7
Sample C Male 15.4
Sample D Male 13.2
Subiculum
nTPM: 15.3
Samples: 4

Max nTPM: 19.0
Min nTPM: 12.7
Sample A Female 19.0
Sample B Female 14.7
Sample C Male 14.7
Sample D Male 12.7
Ventral hippocampus
nTPM: 15.5
Samples: 4

Max nTPM: 19.2
Min nTPM: 11.7
Sample A Female 16.2
Sample B Female 11.7
Sample C Male 19.2
Sample D Male 14.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 63.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 62.6
Samples: 4

Max nTPM: 65.3
Min nTPM: 58.5
Sample A Male 58.5
Sample B Male 65.3
Sample C Female 63.8
Sample D Female 62.8
Hippocampal formation
nTPM: 63.2
Samples: 4

Max nTPM: 68.9
Min nTPM: 56.6
Sample A Male 67.1
Sample B Male 60.0
Sample C Female 56.6
Sample D Female 68.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.5
71608230 Antisense, RP_050927_01_D02, Mouse strain C57BL/6J (56 days, male) 11.1
293027 Antisense, RP_040609_01_E01, Mouse strain C57BL/6J (56 days, male) 6.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.