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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.8 nTPM
HPA:33.8 nTPM
GTEx:25.0 nTPM
FANTOM5:29.5 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:49.6 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.7
2586 Male, age 75, left hemisphere 34.9
2019 Male, age 18, unknown 34.7
2411 Female, age 72, unknown 33.8
2828 Female, age 72, unknown 32.9
2219 Male, age 76, both hemispheres 32.6
1827 Male, age 72, unknown 32.5
2666 Male, age 74, left hemisphere 31.5
1830 Male, age 51, unknown 31.4
1870 Female, age 42, unknown 31.2
1833 Male, age 53, unknown 31.1
Dorsal raphe nucleus
nTPM: 31.5
2298 Female, age 72, unknown 32.7
2047 Male, age 72, unknown 32.2
2750 Male, age 76, both hemispheres 31.8
1828 Male, age 53, unknown 30.5
2016 Female, age 72, unknown 30.3
Inferior colliculus
nTPM: 31.4
2097 Female, age 72, unknown 32.2
1890 Male, age 53, unknown 31.5
2849 Male, age 72, unknown 31.1
1848 Female, age 42, unknown 30.7
Median raphe nucleus
nTPM: 32.6
2220 Male, age 76, midline 32.6
Pedunculopontine tegmental nucleus
nTPM: 31.7
1921 Female, age 85, both hemispheres 32.3
2338 Male, age 61, both hemispheres 31.6
2334 Male, age 80, both hemispheres 31.3
Periaquaductal grey, anterior
nTPM: 31.3
1795 Male, age 51, unknown 31.6
1947 Male, age 18, unknown 31.2
2502 Female, age 75, unknown 31.2
Periaquaductal grey, dorsal
nTPM: 31.3
2464 Female, age 72, unknown 31.9
1840 Male, age 53, unknown 31.6
1831 Male, age 72, unknown 31.1
2850 Male, age 76, both hemispheres 30.8
Periaquaductal grey, lateral
nTPM: 31.3
2272 Male, age 74, both hemispheres 31.5
2053 Male, age 18, unknown 31.3
2140 Male, age 76, both hemispheres 31.2
Pretectal area
nTPM: 33.8
1817 Female, age 42, unknown 36.0
1816 Male, age 51, unknown 35.8
2007 Male, age 72, unknown 35.8
2407 Male, age 75, both hemispheres 35.3
1944 Female, age 72, unknown 34.8
1815 Male, age 53, unknown 34.7
2667 Female, age 75, unknown 34.3
2316 Male, age 76, right hemisphere 32.0
2273 Male, age 74, both hemispheres 31.4
2224 Female, age 72, unknown 31.3
2825 Male, age 18, unknown 30.0
Red nucleus
nTPM: 31.9
2785 Male, age 18, unknown 34.6
2584 Male, age 75, left hemisphere 33.1
2588 Male, age 74, left hemisphere 32.9
1865 Male, age 51, unknown 32.2
1904 Male, age 53, unknown 32.2
1821 Female, age 72, unknown 31.6
2227 Male, age 72, unknown 31.4
2769 Male, age 72, unknown 31.4
2823 Male, age 76, right hemisphere 31.3
1954 Female, age 42, unknown 31.0
2725 Female, age 75, unknown 30.7
2503 Female, age 72, unknown 30.4
Substantia nigra
nTPM: 31.7
2583 Male, age 75, right hemisphere 34.7
2590 Female, age 75, unknown 32.8
1889 Female, age 72, unknown 32.7
1941 Male, age 53, unknown 32.2
1851 Male, age 51, unknown 31.8
1916 Female, age 42, unknown 31.8
2665 Male, age 74, both hemispheres 31.4
2241 Male, age 72, unknown 30.4
2699 Male, age 18, unknown 29.9
2409 Female, age 72, unknown 29.3
Superior colliculus
nTPM: 32.8
2664 Male, age 75, both hemispheres 34.8
2261 Male, age 18, unknown 34.3
2087 Female, age 72, unknown 33.5
1995 Male, age 72, unknown 33.1
1913 Female, age 42, unknown 33.0
1796 Male, age 53, unknown 32.5
2668 Female, age 75, unknown 32.4
2587 Male, age 74, left hemisphere 31.9
1839 Male, age 51, unknown 31.3
1895 Male, age 76, right hemisphere 31.3
Ventral tegmental area
nTPM: 31.9
2410 Female, age 72, unknown 32.8
2021 Male, age 53, unknown 32.6
2218 Male, age 76, both hemispheres 32.0
1942 Male, age 51, unknown 31.9
2223 Female, age 72, unknown 31.3
1915 Female, age 42, unknown 31.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.0
Samples: 139

Max nTPM: 42.9
Min nTPM: 17.2
Std nTPM: 3.7
Median nTPM: 24.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 42.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 35.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 34.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 34.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 33.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 33.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 32.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 31.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 31.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 30.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 30.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.5
FF:10158-103A5 76 years, female 29.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.7
Pig sample Sample description nTPM
Midbrain
nTPM: 14.8
Samples: 4

Max nTPM: 17.3
Min nTPM: 12.1
Sample A Female 16.2
Sample B Female 12.1
Sample C Male 17.3
Sample D Male 13.6
Periaqueductal gray
nTPM: 12.4
Samples: 3

Max nTPM: 14.6
Min nTPM: 11.2
Sample B Female 11.5
Sample C Male 14.6
Sample D Male 11.2
Substantia nigra
nTPM: 14.9
Samples: 4

Max nTPM: 18.4
Min nTPM: 12.2
Sample A Female 18.4
Sample B Female 13.3
Sample C Male 15.5
Sample D Male 12.2
Superior colliculi
nTPM: 15.7
Samples: 4

Max nTPM: 17.7
Min nTPM: 14.4
Sample A Female 17.7
Sample B Female 14.7
Sample C Male 15.8
Sample D Male 14.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 49.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.7
Samples: 4

Max nTPM: 52.3
Min nTPM: 46.8
Sample A Male 52.3
Sample B Male 46.8
Sample C Female 50.1
Sample D Female 49.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
71608230 Antisense, RP_050927_01_D02, Mouse strain C57BL/6J (56 days, male) 5.9
293027 Antisense, RP_040609_01_E01, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.