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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:13.0 nTPM
HPA:13.0 nTPM
GTEx:14.9 nTPM
FANTOM5:71.5 Scaled Tags Per Million
Pig:25.6 nTPM
Mouse:18.7 nTPM
Allen mouse:2.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA034764Antibody HPA034765
Glial cells LowMedium
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 13.0
Sample id Sample description nTPM
Hippocampus
nTPM: 11.9
1898 Male, age 80, left hemisphere 14.9
1911 Female, age 85, right hemisphere 12.3
2621 Female, age 67, right hemisphere 11.8
2529 Female, age 94, left hemisphere 11.6
2148 Female, age 91, left hemisphere 11.2
1855 Male, age 76, left hemisphere 10.0
Dentate gyrus
nTPM: 10.8
1927 Female, age 91, both hemispheres 12.3
2528 Male, age 74, both hemispheres 11.2
2010 Male, age 76, both hemispheres 11.1
2246 Female, age 85, both hemispheres 10.7
2530 Female, age 94, left hemisphere 10.7
2531 Female, age 67, both hemispheres 9.1
Entorhinal gyrus
nTPM: 11.2
2117 Female, age 91, right hemisphere 12.1
2764 Male, age 80, right hemisphere 12.1
1938 Female, age 85, left hemisphere 11.8
2613 Female, age 94, left hemisphere 11.3
1787 Male, age 76, left hemisphere 10.1
2686 Male, age 75, right hemisphere 9.9
Hippocampus, CA1
nTPM: 11.6
2749 Male, age 80, left hemisphere 15.4
2527 Male, age 74, both hemispheres 12.4
1873 Female, age 85, both hemispheres 11.4
2082 Female, age 91, right hemisphere 9.6
2045 Male, age 76, both hemispheres 9.2
Hippocampus, CA2
nTPM: 11.8
1892 Male, age 76, both hemispheres 14.1
1963 Male, age 80, left hemisphere 13.3
2249 Male, age 74, both hemispheres 12.4
2113 Female, age 91, right hemisphere 10.7
2437 Female, age 94, left hemisphere 10.5
1940 Female, age 85, left hemisphere 10.0
Hippocampus, CA3
nTPM: 11.5
2137 Male, age 80, left hemisphere 13.1
2436 Male, age 74, both hemispheres 12.7
1891 Female, age 85, both hemispheres 11.8
1867 Male, age 76, both hemispheres 11.6
2620 Female, age 94, left hemisphere 10.9
2861 Female, age 67, both hemispheres 8.6
Parahippocampal cortex
nTPM: 12.3
1850 Male, age 80, both hemispheres 14.2
2693 Female, age 94, both hemispheres 14.0
2250 Female, age 67, right hemisphere 13.2
1990 Female, age 91, right hemisphere 12.7
2532 Female, age 72, left hemisphere 12.2
2692 Male, age 74, both hemispheres 12.0
2245 Female, age 91, both hemispheres 11.8
1933 Female, age 85, both hemispheres 11.4
2622 Female, age 67, right hemisphere 11.2
2018 Male, age 76, both hemispheres 10.4
Perirhinal gyrus
nTPM: 13.0
1847 Female, age 91, left hemisphere 14.2
1794 Male, age 80, right hemisphere 13.3
1841 Female, age 85, right hemisphere 13.3
2521 Female, age 94, right hemisphere 12.4
2848 Male, age 76, right hemisphere 11.8
Subiculum
nTPM: 11.8
1901 Male, age 80, both hemispheres 14.0
2619 Male, age 74, both hemispheres 12.2
1977 Female, age 85, both hemispheres 12.0
2438 Female, age 94, left hemisphere 11.9
2729 Female, age 91, right hemisphere 11.1
2042 Male, age 76, both hemispheres 9.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 14.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 14.9
Samples: 197

Max nTPM: 31.5
Min nTPM: 6.4
Std nTPM: 4.0
Median nTPM: 14.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 31.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 24.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 23.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 23.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 23.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 22.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 22.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 22.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 21.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 21.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 21.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 71.5
FF:10169-103B7 60 years, female 75.3
FF:10153-102I9 76 years, female 67.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 25.6
Samples: 4

Max nTPM: 35.6
Min nTPM: 17.5
Sample A Female 35.6
Sample B Female 23.2
Sample C Male 26.2
Sample D Male 17.5
Entorhinal cortex
nTPM: 16.1
Samples: 4

Max nTPM: 17.3
Min nTPM: 14.1
Sample A Female 16.1
Sample B Female 17.0
Sample C Male 17.3
Sample D Male 14.1
Subiculum
nTPM: 20.8
Samples: 4

Max nTPM: 23.8
Min nTPM: 16.4
Sample A Female 23.8
Sample B Female 22.3
Sample C Male 16.4
Sample D Male 20.6
Ventral hippocampus
nTPM: 23.9
Samples: 4

Max nTPM: 28.9
Min nTPM: 21.5
Sample A Female 28.9
Sample B Female 22.6
Sample C Male 22.6
Sample D Male 21.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 18.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.1
Samples: 4

Max nTPM: 19.4
Min nTPM: 16.9
Sample A Male 17.6
Sample B Male 16.9
Sample C Female 19.4
Sample D Female 18.3
Hippocampal formation
nTPM: 18.7
Samples: 4

Max nTPM: 19.7
Min nTPM: 17.5
Sample A Male 18.2
Sample B Male 19.7
Sample C Female 19.3
Sample D Female 17.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
386242 Antisense, RP_040804_01_D03, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.