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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.2 nTPM
HPA:13.2 nTPM
GTEx:15.8 nTPM
FANTOM5:74.1 Scaled Tags Per Million
Pig:41.1 nTPM
Mouse:21.9 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.2
2019 Male, age 18, unknown 13.9
2219 Male, age 76, both hemispheres 12.6
2411 Female, age 72, unknown 12.6
1870 Female, age 42, unknown 11.9
1827 Male, age 72, unknown 11.8
2828 Female, age 72, unknown 10.5
1830 Male, age 51, unknown 10.4
1833 Male, age 53, unknown 10.3
2666 Male, age 74, left hemisphere 9.7
2586 Male, age 75, left hemisphere 8.4
Dorsal raphe nucleus
nTPM: 12.5
2750 Male, age 76, both hemispheres 14.7
2298 Female, age 72, unknown 13.1
2047 Male, age 72, unknown 12.2
1828 Male, age 53, unknown 12.0
2016 Female, age 72, unknown 10.4
Inferior colliculus
nTPM: 12.5
2097 Female, age 72, unknown 14.3
1890 Male, age 53, unknown 12.9
1848 Female, age 42, unknown 12.4
2849 Male, age 72, unknown 10.2
Median raphe nucleus
nTPM: 13.1
2220 Male, age 76, midline 13.1
Pedunculopontine tegmental nucleus
nTPM: 13.1
1921 Female, age 85, both hemispheres 13.9
2334 Male, age 80, both hemispheres 13.7
2338 Male, age 61, both hemispheres 11.9
Periaquaductal grey, anterior
nTPM: 12.0
1947 Male, age 18, unknown 13.2
2502 Female, age 75, unknown 12.2
1795 Male, age 51, unknown 10.5
Periaquaductal grey, dorsal
nTPM: 10.4
2850 Male, age 76, both hemispheres 11.1
1840 Male, age 53, unknown 10.5
2464 Female, age 72, unknown 10.2
1831 Male, age 72, unknown 9.8
Periaquaductal grey, lateral
nTPM: 10.0
2272 Male, age 74, both hemispheres 10.6
2053 Male, age 18, unknown 9.8
2140 Male, age 76, both hemispheres 9.7
Pretectal area
nTPM: 12.4
1944 Female, age 72, unknown 14.9
1816 Male, age 51, unknown 14.3
1817 Female, age 42, unknown 14.3
2007 Male, age 72, unknown 13.9
2667 Female, age 75, unknown 13.5
1815 Male, age 53, unknown 12.7
2224 Female, age 72, unknown 11.9
2273 Male, age 74, both hemispheres 11.1
2316 Male, age 76, right hemisphere 10.3
2407 Male, age 75, both hemispheres 9.8
2825 Male, age 18, unknown 9.8
Red nucleus
nTPM: 12.7
1821 Female, age 72, unknown 15.8
2725 Female, age 75, unknown 14.0
1865 Male, age 51, unknown 13.6
1904 Male, age 53, unknown 13.5
2503 Female, age 72, unknown 13.5
1954 Female, age 42, unknown 13.0
2785 Male, age 18, unknown 12.7
2823 Male, age 76, right hemisphere 12.5
2769 Male, age 72, unknown 12.0
2227 Male, age 72, unknown 11.4
2588 Male, age 74, left hemisphere 10.2
2584 Male, age 75, left hemisphere 9.7
Substantia nigra
nTPM: 13.2
2241 Male, age 72, unknown 18.2
1916 Female, age 42, unknown 15.5
1889 Female, age 72, unknown 14.7
1851 Male, age 51, unknown 14.3
1941 Male, age 53, unknown 14.0
2409 Female, age 72, unknown 13.1
2699 Male, age 18, unknown 11.6
2590 Female, age 75, unknown 11.1
2665 Male, age 74, both hemispheres 10.1
2583 Male, age 75, right hemisphere 9.7
Superior colliculus
nTPM: 11.1
1895 Male, age 76, right hemisphere 13.1
2087 Female, age 72, unknown 12.9
2587 Male, age 74, left hemisphere 12.5
1913 Female, age 42, unknown 12.0
2261 Male, age 18, unknown 11.4
1796 Male, age 53, unknown 11.3
2668 Female, age 75, unknown 10.3
1839 Male, age 51, unknown 10.0
1995 Male, age 72, unknown 9.8
2664 Male, age 75, both hemispheres 8.1
Ventral tegmental area
nTPM: 12.1
2218 Male, age 76, both hemispheres 13.6
1915 Female, age 42, unknown 12.7
2410 Female, age 72, unknown 12.5
2223 Female, age 72, unknown 11.7
1942 Male, age 51, unknown 11.5
2021 Male, age 53, unknown 10.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.8
Samples: 139

Max nTPM: 30.7
Min nTPM: 6.7
Std nTPM: 4.5
Median nTPM: 15.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 30.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 28.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 27.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 26.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 26.2
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 25.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 24.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 24.5
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 24.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 23.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.1
FF:10158-103A5 76 years, female 74.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.1
Pig sample Sample description nTPM
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 28.9
Min nTPM: 19.6
Sample A Female 27.0
Sample B Female 28.9
Sample C Male 28.0
Sample D Male 19.6
Periaqueductal gray
nTPM: 41.1
Samples: 3

Max nTPM: 44.1
Min nTPM: 36.0
Sample B Female 36.0
Sample C Male 43.1
Sample D Male 44.1
Substantia nigra
nTPM: 22.0
Samples: 4

Max nTPM: 28.0
Min nTPM: 18.7
Sample A Female 28.0
Sample B Female 21.5
Sample C Male 19.8
Sample D Male 18.7
Superior colliculi
nTPM: 26.8
Samples: 4

Max nTPM: 36.1
Min nTPM: 22.3
Sample A Female 24.6
Sample B Female 36.1
Sample C Male 24.1
Sample D Male 22.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 22.6
Min nTPM: 20.5
Sample A Male 20.5
Sample B Male 22.6
Sample C Female 22.5
Sample D Female 21.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
386242 Antisense, RP_040804_01_D03, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

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