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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:27.2 nTPM
HPA:27.2 nTPM
GTEx:30.7 nTPM
FANTOM5:153.5 Scaled Tags Per Million
Pig:53.4 nTPM
Mouse:194.5 nTPM
Allen mouse:14.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041863Antibody HPA050339
Glial cells HighLow
Neuronal cells HighHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Hippocampus
nTPM: 25.4
1898 Male, age 80, left hemisphere 30.1
2529 Female, age 94, left hemisphere 25.0
2621 Female, age 67, right hemisphere 24.9
1855 Male, age 76, left hemisphere 24.8
2148 Female, age 91, left hemisphere 24.0
1911 Female, age 85, right hemisphere 23.3
Dentate gyrus
nTPM: 25.6
2010 Male, age 76, both hemispheres 26.7
1927 Female, age 91, both hemispheres 26.6
2530 Female, age 94, left hemisphere 26.3
2528 Male, age 74, both hemispheres 25.7
2246 Female, age 85, both hemispheres 25.0
2531 Female, age 67, both hemispheres 23.0
Entorhinal gyrus
nTPM: 24.9
2764 Male, age 80, right hemisphere 26.4
1938 Female, age 85, left hemisphere 25.8
1787 Male, age 76, left hemisphere 25.6
2613 Female, age 94, left hemisphere 25.1
2117 Female, age 91, right hemisphere 23.7
2686 Male, age 75, right hemisphere 22.7
Hippocampus, CA1
nTPM: 26.8
2749 Male, age 80, left hemisphere 34.1
1873 Female, age 85, both hemispheres 25.9
2527 Male, age 74, both hemispheres 25.7
2082 Female, age 91, right hemisphere 24.6
2045 Male, age 76, both hemispheres 23.5
Hippocampus, CA2
nTPM: 26.3
1963 Male, age 80, left hemisphere 29.8
1892 Male, age 76, both hemispheres 28.5
2249 Male, age 74, both hemispheres 27.1
2437 Female, age 94, left hemisphere 25.3
1940 Female, age 85, left hemisphere 23.7
2113 Female, age 91, right hemisphere 23.3
Hippocampus, CA3
nTPM: 25.9
2137 Male, age 80, left hemisphere 29.2
2436 Male, age 74, both hemispheres 29.2
1867 Male, age 76, both hemispheres 26.0
1891 Female, age 85, both hemispheres 24.0
2861 Female, age 67, both hemispheres 23.5
2620 Female, age 94, left hemisphere 23.4
Parahippocampal cortex
nTPM: 25.4
1850 Male, age 80, both hemispheres 28.2
1990 Female, age 91, right hemisphere 26.7
2250 Female, age 67, right hemisphere 26.6
2245 Female, age 91, both hemispheres 26.0
1933 Female, age 85, both hemispheres 25.7
2018 Male, age 76, both hemispheres 24.9
2532 Female, age 72, left hemisphere 24.6
2693 Female, age 94, both hemispheres 24.2
2692 Male, age 74, both hemispheres 23.6
2622 Female, age 67, right hemisphere 23.5
Perirhinal gyrus
nTPM: 27.2
1847 Female, age 91, left hemisphere 30.1
1794 Male, age 80, right hemisphere 28.6
1841 Female, age 85, right hemisphere 26.7
2521 Female, age 94, right hemisphere 25.3
2848 Male, age 76, right hemisphere 25.2
Subiculum
nTPM: 24.8
1901 Male, age 80, both hemispheres 26.1
1977 Female, age 85, both hemispheres 26.1
2438 Female, age 94, left hemisphere 26.1
2619 Male, age 74, both hemispheres 23.9
2729 Female, age 91, right hemisphere 23.5
2042 Male, age 76, both hemispheres 22.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 30.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.7
Samples: 197

Max nTPM: 84.3
Min nTPM: 15.0
Std nTPM: 10.2
Median nTPM: 28.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 84.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 62.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 60.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 58.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 57.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 55.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 53.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 53.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 51.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 50.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 48.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 153.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 153.5
FF:10169-103B7 60 years, female 240.6
FF:10153-102I9 76 years, female 66.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 53.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 51.4
Samples: 4

Max nTPM: 58.4
Min nTPM: 41.0
Sample A Female 58.4
Sample B Female 51.7
Sample C Male 54.4
Sample D Male 41.0
Entorhinal cortex
nTPM: 53.4
Samples: 4

Max nTPM: 61.7
Min nTPM: 44.3
Sample A Female 52.7
Sample B Female 61.7
Sample C Male 54.7
Sample D Male 44.3
Subiculum
nTPM: 50.5
Samples: 4

Max nTPM: 65.5
Min nTPM: 43.5
Sample A Female 65.5
Sample B Female 43.5
Sample C Male 47.8
Sample D Male 45.0
Ventral hippocampus
nTPM: 50.3
Samples: 4

Max nTPM: 59.2
Min nTPM: 40.5
Sample A Female 59.2
Sample B Female 40.5
Sample C Male 56.2
Sample D Male 45.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 194.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 169.0
Samples: 4

Max nTPM: 179.2
Min nTPM: 163.1
Sample A Male 163.1
Sample B Male 168.9
Sample C Female 179.2
Sample D Female 164.8
Hippocampal formation
nTPM: 194.6
Samples: 4

Max nTPM: 213.0
Min nTPM: 182.4
Sample A Male 213.0
Sample B Male 182.4
Sample C Female 189.1
Sample D Female 193.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.5
70565401 Antisense, RP_050623_04_H03, Mouse strain C57BL/6J (56 days, male) 14.5
71924399 Antisense, RP_050623_04_H03, Mouse strain C57BL/6J (56 days, male) 10.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.