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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:245.9 nTPM
HPA:245.9 nTPM
GTEx:174.1 nTPM
FANTOM5:238.3 Scaled Tags Per Million
Pig:76.6 nTPM
Mouse:392.2 nTPM
Allen mouse:9.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA044577
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 245.9
Sample id Sample description nTPM
Hippocampus
nTPM: 231.3
1898 Male, age 80, left hemisphere 256.6
2529 Female, age 94, left hemisphere 229.5
1855 Male, age 76, left hemisphere 227.9
1911 Female, age 85, right hemisphere 226.2
2621 Female, age 67, right hemisphere 224.1
2148 Female, age 91, left hemisphere 223.5
Dentate gyrus
nTPM: 234.1
2010 Male, age 76, both hemispheres 247.1
1927 Female, age 91, both hemispheres 242.6
2530 Female, age 94, left hemisphere 236.2
2528 Male, age 74, both hemispheres 230.3
2246 Female, age 85, both hemispheres 225.3
2531 Female, age 67, both hemispheres 223.0
Entorhinal gyrus
nTPM: 232.6
2764 Male, age 80, right hemisphere 241.1
1938 Female, age 85, left hemisphere 238.6
1787 Male, age 76, left hemisphere 233.9
2613 Female, age 94, left hemisphere 229.1
2686 Male, age 75, right hemisphere 229.1
2117 Female, age 91, right hemisphere 224.1
Hippocampus, CA1
nTPM: 240.5
2749 Male, age 80, left hemisphere 268.7
2045 Male, age 76, both hemispheres 238.7
1873 Female, age 85, both hemispheres 235.8
2527 Male, age 74, both hemispheres 230.7
2082 Female, age 91, right hemisphere 228.5
Hippocampus, CA2
nTPM: 240.4
1963 Male, age 80, left hemisphere 257.4
1892 Male, age 76, both hemispheres 253.8
2249 Male, age 74, both hemispheres 242.3
2437 Female, age 94, left hemisphere 233.4
1940 Female, age 85, left hemisphere 228.5
2113 Female, age 91, right hemisphere 227.2
Hippocampus, CA3
nTPM: 236.4
1867 Male, age 76, both hemispheres 247.2
2137 Male, age 80, left hemisphere 245.5
2436 Male, age 74, both hemispheres 243.4
1891 Female, age 85, both hemispheres 235.4
2620 Female, age 94, left hemisphere 225.4
2861 Female, age 67, both hemispheres 221.5
Parahippocampal cortex
nTPM: 233.5
1850 Male, age 80, both hemispheres 253.0
1990 Female, age 91, right hemisphere 240.8
2018 Male, age 76, both hemispheres 239.2
1933 Female, age 85, both hemispheres 237.5
2250 Female, age 67, right hemisphere 232.0
2532 Female, age 72, left hemisphere 230.0
2693 Female, age 94, both hemispheres 229.3
2245 Female, age 91, both hemispheres 228.0
2692 Male, age 74, both hemispheres 225.1
2622 Female, age 67, right hemisphere 219.5
Perirhinal gyrus
nTPM: 245.9
1847 Female, age 91, left hemisphere 255.2
1794 Male, age 80, right hemisphere 253.0
1841 Female, age 85, right hemisphere 249.9
2848 Male, age 76, right hemisphere 239.4
2521 Female, age 94, right hemisphere 231.9
Subiculum
nTPM: 232.2
1901 Male, age 80, both hemispheres 241.1
1977 Female, age 85, both hemispheres 239.0
2438 Female, age 94, left hemisphere 235.5
2042 Male, age 76, both hemispheres 228.9
2619 Male, age 74, both hemispheres 225.3
2729 Female, age 91, right hemisphere 223.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 174.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 174.1
Samples: 197

Max nTPM: 578.3
Min nTPM: 78.5
Std nTPM: 62.5
Median nTPM: 158.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 578.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 422.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 326.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 309.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 308.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 304.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 299.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 297.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 296.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 291.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 285.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 238.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 238.3
FF:10169-103B7 60 years, female 304.4
FF:10153-102I9 76 years, female 172.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 76.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 75.2
Samples: 4

Max nTPM: 99.2
Min nTPM: 51.5
Sample A Female 99.2
Sample B Female 70.3
Sample C Male 79.6
Sample D Male 51.5
Entorhinal cortex
nTPM: 76.6
Samples: 4

Max nTPM: 92.4
Min nTPM: 66.6
Sample A Female 79.2
Sample B Female 92.4
Sample C Male 68.3
Sample D Male 66.6
Subiculum
nTPM: 62.3
Samples: 4

Max nTPM: 86.2
Min nTPM: 50.4
Sample A Female 86.2
Sample B Female 50.4
Sample C Male 56.1
Sample D Male 56.6
Ventral hippocampus
nTPM: 59.3
Samples: 4

Max nTPM: 69.0
Min nTPM: 47.8
Sample A Female 69.0
Sample B Female 47.8
Sample C Male 53.6
Sample D Male 66.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 392.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 364.2
Samples: 4

Max nTPM: 390.5
Min nTPM: 333.9
Sample A Male 343.7
Sample B Male 388.7
Sample C Female 390.5
Sample D Female 333.9
Hippocampal formation
nTPM: 392.2
Samples: 4

Max nTPM: 440.4
Min nTPM: 358.2
Sample A Male 440.4
Sample B Male 382.8
Sample C Female 358.2
Sample D Female 387.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.6
69735001 Antisense, RP_050503_01_H04, Mouse strain C57BL/6J (56 days, male) 10.2
73520984 Antisense, RP_051101_02_G03, Mouse strain C57BL/6J (56 days, male) 9.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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