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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:237.2 nTPM
HPA:237.2 nTPM
GTEx:184.6 nTPM
FANTOM5:173.4 Scaled Tags Per Million
Pig:68.8 nTPM
Mouse:385.4 nTPM
Allen mouse:8.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 237.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 228.3
2019 Male, age 18, unknown 238.9
1827 Male, age 72, unknown 235.3
1870 Female, age 42, unknown 231.9
2411 Female, age 72, unknown 231.9
2666 Male, age 74, left hemisphere 226.3
2586 Male, age 75, left hemisphere 225.4
2828 Female, age 72, unknown 224.6
2219 Male, age 76, both hemispheres 223.8
1833 Male, age 53, unknown 223.0
1830 Male, age 51, unknown 221.8
Dorsal raphe nucleus
nTPM: 232.2
2298 Female, age 72, unknown 247.9
1828 Male, age 53, unknown 232.1
2047 Male, age 72, unknown 230.7
2750 Male, age 76, both hemispheres 229.1
2016 Female, age 72, unknown 221.2
Inferior colliculus
nTPM: 229.3
2097 Female, age 72, unknown 243.7
1890 Male, age 53, unknown 230.1
1848 Female, age 42, unknown 225.5
2849 Male, age 72, unknown 217.9
Median raphe nucleus
nTPM: 225.0
2220 Male, age 76, midline 225.0
Pedunculopontine tegmental nucleus
nTPM: 232.1
2334 Male, age 80, both hemispheres 233.5
1921 Female, age 85, both hemispheres 232.4
2338 Male, age 61, both hemispheres 230.4
Periaquaductal grey, anterior
nTPM: 228.6
1795 Male, age 51, unknown 228.9
1947 Male, age 18, unknown 228.5
2502 Female, age 75, unknown 228.4
Periaquaductal grey, dorsal
nTPM: 222.9
1840 Male, age 53, unknown 226.0
1831 Male, age 72, unknown 224.6
2464 Female, age 72, unknown 223.3
2850 Male, age 76, both hemispheres 217.9
Periaquaductal grey, lateral
nTPM: 222.1
2053 Male, age 18, unknown 224.9
2272 Male, age 74, both hemispheres 222.7
2140 Male, age 76, both hemispheres 218.6
Pretectal area
nTPM: 233.9
2007 Male, age 72, unknown 247.8
1816 Male, age 51, unknown 246.8
1944 Female, age 72, unknown 240.3
1817 Female, age 42, unknown 239.7
1815 Male, age 53, unknown 234.2
2224 Female, age 72, unknown 232.3
2667 Female, age 75, unknown 231.5
2273 Male, age 74, both hemispheres 228.8
2316 Male, age 76, right hemisphere 226.7
2825 Male, age 18, unknown 223.7
2407 Male, age 75, both hemispheres 221.4
Red nucleus
nTPM: 226.4
1821 Female, age 72, unknown 240.3
2785 Male, age 18, unknown 231.1
2725 Female, age 75, unknown 229.0
2503 Female, age 72, unknown 226.9
2823 Male, age 76, right hemisphere 225.8
2769 Male, age 72, unknown 225.1
1954 Female, age 42, unknown 225.0
1904 Male, age 53, unknown 223.9
1865 Male, age 51, unknown 223.8
2227 Male, age 72, unknown 223.3
2584 Male, age 75, left hemisphere 223.3
2588 Male, age 74, left hemisphere 218.8
Substantia nigra
nTPM: 237.2
1851 Male, age 51, unknown 248.4
1916 Female, age 42, unknown 246.7
1889 Female, age 72, unknown 242.7
2241 Male, age 72, unknown 242.1
1941 Male, age 53, unknown 242.0
2409 Female, age 72, unknown 238.9
2665 Male, age 74, both hemispheres 231.1
2590 Female, age 75, unknown 229.5
2583 Male, age 75, right hemisphere 226.5
2699 Male, age 18, unknown 224.1
Superior colliculus
nTPM: 228.6
2087 Female, age 72, unknown 238.0
2668 Female, age 75, unknown 233.3
2261 Male, age 18, unknown 231.5
1796 Male, age 53, unknown 230.7
2587 Male, age 74, left hemisphere 230.7
1895 Male, age 76, right hemisphere 228.9
1913 Female, age 42, unknown 225.5
2664 Male, age 75, both hemispheres 223.1
1839 Male, age 51, unknown 222.8
1995 Male, age 72, unknown 221.3
Ventral tegmental area
nTPM: 231.1
1915 Female, age 42, unknown 241.8
2410 Female, age 72, unknown 240.2
2218 Male, age 76, both hemispheres 227.2
2223 Female, age 72, unknown 226.8
1942 Male, age 51, unknown 226.2
2021 Male, age 53, unknown 224.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 184.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 184.6
Samples: 139

Max nTPM: 386.1
Min nTPM: 96.7
Std nTPM: 51.8
Median nTPM: 169.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 386.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 345.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 325.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 308.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 303.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 299.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 297.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 293.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 276.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 276.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 274.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 173.4
FF:10158-103A5 76 years, female 173.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.8
Pig sample Sample description nTPM
Midbrain
nTPM: 60.9
Samples: 4

Max nTPM: 77.4
Min nTPM: 48.1
Sample A Female 48.1
Sample B Female 52.1
Sample C Male 77.4
Sample D Male 65.9
Periaqueductal gray
nTPM: 42.3
Samples: 3

Max nTPM: 51.2
Min nTPM: 36.3
Sample B Female 39.3
Sample C Male 51.2
Sample D Male 36.3
Substantia nigra
nTPM: 50.9
Samples: 4

Max nTPM: 79.9
Min nTPM: 30.0
Sample A Female 79.9
Sample B Female 38.9
Sample C Male 54.9
Sample D Male 30.0
Superior colliculi
nTPM: 68.8
Samples: 4

Max nTPM: 84.9
Min nTPM: 48.3
Sample A Female 83.9
Sample B Female 48.3
Sample C Male 84.9
Sample D Male 58.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 385.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 385.4
Samples: 4

Max nTPM: 425.2
Min nTPM: 338.8
Sample A Male 425.2
Sample B Male 387.1
Sample C Female 338.8
Sample D Female 390.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
69735001 Antisense, RP_050503_01_H04, Mouse strain C57BL/6J (56 days, male) 9.4
73520984 Antisense, RP_051101_02_G03, Mouse strain C57BL/6J (56 days, male) 7.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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