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CNBP
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:175.1 nTPM
HPA:175.1 nTPM
GTEx:218.4 nTPM
FANTOM5:245.1 Scaled Tags Per Million
Pig:47.6 nTPM
Mouse:259.1 nTPM
Allen mouse:13.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 175.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 167.7
1870 Female, age 42, unknown 177.7
2019 Male, age 18, unknown 175.8
2411 Female, age 72, unknown 175.0
1827 Male, age 72, unknown 171.6
2828 Female, age 72, unknown 169.7
1833 Male, age 53, unknown 167.3
1830 Male, age 51, unknown 166.7
2586 Male, age 75, left hemisphere 160.9
2219 Male, age 76, both hemispheres 157.0
2666 Male, age 74, left hemisphere 155.6
Dorsal raphe nucleus
nTPM: 174.1
2298 Female, age 72, unknown 184.4
1828 Male, age 53, unknown 174.1
2016 Female, age 72, unknown 172.6
2750 Male, age 76, both hemispheres 171.5
2047 Male, age 72, unknown 168.0
Inferior colliculus
nTPM: 173.8
2097 Female, age 72, unknown 187.8
1890 Male, age 53, unknown 172.8
1848 Female, age 42, unknown 171.2
2849 Male, age 72, unknown 163.6
Median raphe nucleus
nTPM: 164.2
2220 Male, age 76, midline 164.2
Pedunculopontine tegmental nucleus
nTPM: 170.0
1921 Female, age 85, both hemispheres 173.8
2334 Male, age 80, both hemispheres 171.2
2338 Male, age 61, both hemispheres 164.9
Periaquaductal grey, anterior
nTPM: 172.5
2502 Female, age 75, unknown 175.8
1947 Male, age 18, unknown 174.5
1795 Male, age 51, unknown 167.0
Periaquaductal grey, dorsal
nTPM: 170.0
2850 Male, age 76, both hemispheres 173.9
1840 Male, age 53, unknown 172.4
2464 Female, age 72, unknown 167.4
1831 Male, age 72, unknown 166.5
Periaquaductal grey, lateral
nTPM: 170.4
2053 Male, age 18, unknown 172.1
2140 Male, age 76, both hemispheres 170.8
2272 Male, age 74, both hemispheres 168.4
Pretectal area
nTPM: 173.5
2273 Male, age 74, both hemispheres 181.8
2667 Female, age 75, unknown 179.5
1817 Female, age 42, unknown 177.6
1816 Male, age 51, unknown 176.8
2224 Female, age 72, unknown 175.3
1944 Female, age 72, unknown 173.9
2316 Male, age 76, right hemisphere 173.1
2007 Male, age 72, unknown 173.0
1815 Male, age 53, unknown 171.4
2825 Male, age 18, unknown 164.0
2407 Male, age 75, both hemispheres 162.1
Red nucleus
nTPM: 175.1
1821 Female, age 72, unknown 193.0
1954 Female, age 42, unknown 181.1
1865 Male, age 51, unknown 178.7
2503 Female, age 72, unknown 178.7
1904 Male, age 53, unknown 178.1
2823 Male, age 76, right hemisphere 176.5
2227 Male, age 72, unknown 175.6
2725 Female, age 75, unknown 175.0
2769 Male, age 72, unknown 174.7
2785 Male, age 18, unknown 171.6
2588 Male, age 74, left hemisphere 162.2
2584 Male, age 75, left hemisphere 156.3
Substantia nigra
nTPM: 171.7
2241 Male, age 72, unknown 180.4
1851 Male, age 51, unknown 176.6
1889 Female, age 72, unknown 176.1
1916 Female, age 42, unknown 175.9
2409 Female, age 72, unknown 175.6
1941 Male, age 53, unknown 169.5
2590 Female, age 75, unknown 168.7
2699 Male, age 18, unknown 168.4
2665 Male, age 74, both hemispheres 164.3
2583 Male, age 75, right hemisphere 161.9
Superior colliculus
nTPM: 170.3
1995 Male, age 72, unknown 176.2
1913 Female, age 42, unknown 176.0
2587 Male, age 74, left hemisphere 175.0
2261 Male, age 18, unknown 173.3
1895 Male, age 76, right hemisphere 172.4
2087 Female, age 72, unknown 171.2
1796 Male, age 53, unknown 171.1
1839 Male, age 51, unknown 166.4
2668 Female, age 75, unknown 163.7
2664 Male, age 75, both hemispheres 158.1
Ventral tegmental area
nTPM: 171.3
2410 Female, age 72, unknown 181.8
1915 Female, age 42, unknown 173.9
1942 Male, age 51, unknown 168.9
2223 Female, age 72, unknown 168.5
2021 Male, age 53, unknown 168.3
2218 Male, age 76, both hemispheres 166.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 218.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 218.4
Samples: 139

Max nTPM: 349.9
Min nTPM: 145.7
Std nTPM: 43.7
Median nTPM: 205.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 349.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 341.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 337.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 315.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 315.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 314.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 308.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 306.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 306.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 299.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 294.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 245.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 245.1
FF:10158-103A5 76 years, female 245.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.6
Pig sample Sample description nTPM
Midbrain
nTPM: 47.2
Samples: 4

Max nTPM: 55.4
Min nTPM: 42.5
Sample A Female 55.4
Sample B Female 46.8
Sample C Male 42.5
Sample D Male 44.1
Periaqueductal gray
nTPM: 43.4
Samples: 3

Max nTPM: 44.5
Min nTPM: 42.8
Sample B Female 42.8
Sample C Male 44.5
Sample D Male 42.8
Substantia nigra
nTPM: 45.1
Samples: 4

Max nTPM: 49.0
Min nTPM: 42.4
Sample A Female 49.0
Sample B Female 46.2
Sample C Male 42.4
Sample D Male 42.6
Superior colliculi
nTPM: 47.6
Samples: 4

Max nTPM: 50.4
Min nTPM: 45.0
Sample A Female 50.4
Sample B Female 48.6
Sample C Male 46.4
Sample D Male 45.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 259.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 259.1
Samples: 4

Max nTPM: 265.7
Min nTPM: 255.5
Sample A Male 265.7
Sample B Male 255.5
Sample C Female 257.8
Sample D Female 257.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.1
70593287 Antisense, RP_050407_01_G07, Mouse strain C57BL/6J (56 days, male) 13.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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