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UBE2E3
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:60.8 nTPM
HPA:60.8 nTPM
GTEx:63.6 nTPM
FANTOM5:119.4 Scaled Tags Per Million
Pig:30.4 nTPM
Mouse:79.2 nTPM
Allen mouse:0.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003303Antibody HPA030445
Glial cells Not detectedNot detected
Neuronal cells -Low





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 60.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 53.6
2481 Female, age 94, left hemisphere 56.7
2288 Male, age 75, left hemisphere 55.0
1857 Female, age 85, left hemisphere 54.8
1781 Male, age 74, unknown 53.3
2290 Female, age 72, unknown 53.2
2846 Female, age 79, unknown 52.9
1854 Male, age 80, left hemisphere 52.3
2289 Male, age 61, right hemisphere 50.5
Claustrum
nTPM: 53.7
2491 Male, age 75, both hemispheres 56.1
2196 Female, age 79, unknown 55.9
1956 Male, age 74, unknown 55.6
2198 Male, age 80, both hemispheres 54.2
2568 Male, age 61, both hemispheres 53.4
2284 Female, age 91, both hemispheres 53.3
2392 Female, age 94, both hemispheres 52.9
2645 Female, age 72, unknown 50.9
2292 Female, age 85, both hemispheres 50.8
Globus pallidus, externus
nTPM: 55.9
1996 Male, age 80, right hemisphere 60.1
2772 Female, age 79, unknown 58.1
2395 Male, age 75, both hemispheres 56.9
2567 Female, age 72, unknown 52.6
2646 Male, age 61, right hemisphere 51.6
Globus pallidus, internus
nTPM: 57.4
2287 Male, age 75, right hemisphere 63.2
2483 Female, age 94, right hemisphere 59.4
2037 Male, age 80, right hemisphere 57.3
1818 Male, age 74, unknown 56.8
2778 Female, age 91, both hemispheres 56.0
2111 Female, age 85, right hemisphere 55.6
2566 Female, age 72, unknown 53.6
Nucleus accumbens
nTPM: 55.8
2286 Male, age 75, left hemisphere 58.9
1806 Female, age 85, left hemisphere 58.5
2698 Female, age 72, unknown 58.2
2824 Male, age 61, right hemisphere 55.8
1783 Male, age 74, unknown 54.9
1856 Female, age 91, right hemisphere 54.2
2732 Male, age 80, right hemisphere 53.4
2391 Female, age 94, left hemisphere 52.6
Nucleus basalis of Meynert
nTPM: 51.8
2569 Male, age 61, both hemispheres 54.0
2821 Male, age 75, both hemispheres 51.9
2393 Male, age 80, right hemisphere 51.1
2484 Female, age 94, left hemisphere 50.5
Nucleus of the diagonal band
nTPM: 60.8
2775 Male, age 80, right hemisphere 63.2
2029 Male, age 61, right hemisphere 62.5
2195 Female, age 85, both hemispheres 60.5
1812 Female, age 91, both hemispheres 59.9
1979 Male, age 74, unknown 58.0
Olfactory tubercle
nTPM: 60.0
1846 Male, age 80, right hemisphere 60.8
1998 Female, age 91, both hemispheres 60.0
2487 Female, age 94, left hemisphere 59.6
2856 Male, age 75, right hemisphere 59.6
Putamen
nTPM: 51.7
1937 Female, age 91, right hemisphere 54.4
1838 Male, age 80, right hemisphere 53.9
2482 Female, age 94, left hemisphere 52.9
2466 Female, age 79, unknown 52.2
2647 Male, age 75, left hemisphere 51.1
1829 Male, age 74, unknown 50.7
2489 Female, age 72, unknown 47.0
Septal nuclei
nTPM: 58.3
2031 Female, age 72, unknown 66.1
1960 Male, age 74, unknown 61.5
2009 Female, age 91, both hemispheres 58.9
2629 Female, age 94, right hemisphere 57.9
2059 Female, age 85, both hemispheres 57.0
2199 Male, age 80, right hemisphere 54.9
2394 Male, age 61, left hemisphere 51.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 63.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 53.7
Samples: 246

Max nTPM: 93.5
Min nTPM: 35.7
Std nTPM: 9.4
Median nTPM: 52.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 93.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 88.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 85.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 84.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 84.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 82.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 81.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 80.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 76.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 73.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 73.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 63.6
Samples: 246

Max nTPM: 122.3
Min nTPM: 40.5
Std nTPM: 11.3
Median nTPM: 62.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 122.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 113.8
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 99.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 98.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 96.3
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 86.9
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 86.4
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 86.4
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 85.6
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 84.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 84.5
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Brain - Putamen (basal ganglia)
Average nTPM: 54.2
Samples: 205

Max nTPM: 85.4
Min nTPM: 35.9
Std nTPM: 9.0
Median nTPM: 53.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 85.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 85.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 82.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 78.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 76.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 75.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 75.3
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 72.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 71.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 70.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 69.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 86.3
FF:10164-103B2 76 years, female 86.3
Globus pallidus
Scaled Tags Per Million: 119.4
FF:10175-103C4 60 years, female 164.1
FF:10161-103A8 76 years, female 74.8
Nucleus accumbens
Scaled Tags Per Million: 78.4
FF:10037-101F1 23-56 years, mixed 78.4
Putamen
Scaled Tags Per Million: 100.6
FF:10176-103C5 60 years, female 100.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 30.4
Pig sample Sample description nTPM
Caudate
nTPM: 26.1
Samples: 4

Max nTPM: 30.4
Min nTPM: 22.7
Sample A Female 22.7
Sample B Female 30.4
Sample C Male 26.5
Sample D Male 24.6
Putamen
nTPM: 30.4
Samples: 4

Max nTPM: 36.1
Min nTPM: 26.9
Sample A Female 31.2
Sample B Female 27.4
Sample C Male 36.1
Sample D Male 26.9
Septum
nTPM: 25.2
Samples: 4

Max nTPM: 27.4
Min nTPM: 20.9
Sample A Female 26.9
Sample B Female 27.4
Sample C Male 25.4
Sample D Male 20.9
Ventral pallidum
nTPM: 26.6
Samples: 4

Max nTPM: 29.5
Min nTPM: 24.0
Sample A Female 24.0
Sample B Female 29.5
Sample C Male 28.6
Sample D Male 24.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 79.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 67.4
Samples: 4

Max nTPM: 74.3
Min nTPM: 63.1
Sample A Male 63.1
Sample B Male 63.6
Sample C Female 74.3
Sample D Female 68.4
Septum
nTPM: 76.0
Samples: 4

Max nTPM: 82.6
Min nTPM: 70.9
Sample A Male 71.1
Sample B Male 82.6
Sample C Female 79.4
Sample D Female 70.9
Ventral forebrain
nTPM: 79.2
Samples: 4

Max nTPM: 84.1
Min nTPM: 71.3
Sample A Male 80.6
Sample B Male 71.3
Sample C Female 80.9
Sample D Female 84.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
75651166 Antisense, RP_060518_01_C01, Mouse strain C57BL/6J (56 days, male) 0.6
74990503 Antisense, RP_060410_01_B04, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.4
75651166 Antisense, RP_060518_01_C01, Mouse strain C57BL/6J (56 days, male) 0.5
74990503 Antisense, RP_060410_01_B04, Mouse strain C57BL/6J (56 days, male) 0.2

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.