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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:74.3 nTPM
HPA:74.3 nTPM
GTEx:80.8 nTPM
FANTOM5:156.5 Scaled Tags Per Million
Pig:42.2 nTPM
Mouse:93.0 nTPM
Allen mouse:0.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003303Antibody HPA030445
Glial cells Not detectedNot detected
Neuronal cells MediumNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 74.3
Sample id Sample description nTPM
Hippocampus
nTPM: 68.4
1898 Male, age 80, left hemisphere 73.6
2148 Female, age 91, left hemisphere 71.2
1855 Male, age 76, left hemisphere 71.1
2621 Female, age 67, right hemisphere 66.7
1911 Female, age 85, right hemisphere 66.0
2529 Female, age 94, left hemisphere 61.6
Dentate gyrus
nTPM: 66.0
2010 Male, age 76, both hemispheres 71.0
1927 Female, age 91, both hemispheres 70.2
2531 Female, age 67, both hemispheres 69.1
2530 Female, age 94, left hemisphere 65.5
2246 Female, age 85, both hemispheres 61.9
2528 Male, age 74, both hemispheres 58.1
Entorhinal gyrus
nTPM: 61.6
1938 Female, age 85, left hemisphere 67.0
2764 Male, age 80, right hemisphere 64.9
2117 Female, age 91, right hemisphere 63.9
2613 Female, age 94, left hemisphere 62.9
1787 Male, age 76, left hemisphere 56.6
2686 Male, age 75, right hemisphere 54.2
Hippocampus, CA1
nTPM: 74.3
2749 Male, age 80, left hemisphere 98.7
1873 Female, age 85, both hemispheres 73.2
2527 Male, age 74, both hemispheres 71.3
2045 Male, age 76, both hemispheres 70.5
2082 Female, age 91, right hemisphere 57.8
Hippocampus, CA2
nTPM: 67.8
1892 Male, age 76, both hemispheres 80.2
1963 Male, age 80, left hemisphere 77.8
2249 Male, age 74, both hemispheres 69.1
2437 Female, age 94, left hemisphere 63.2
2113 Female, age 91, right hemisphere 58.7
1940 Female, age 85, left hemisphere 57.8
Hippocampus, CA3
nTPM: 69.4
2137 Male, age 80, left hemisphere 82.8
2620 Female, age 94, left hemisphere 78.5
1867 Male, age 76, both hemispheres 65.7
2861 Female, age 67, both hemispheres 64.8
1891 Female, age 85, both hemispheres 63.1
2436 Male, age 74, both hemispheres 61.6
Parahippocampal cortex
nTPM: 61.3
2693 Female, age 94, both hemispheres 67.7
2245 Female, age 91, both hemispheres 66.7
2018 Male, age 76, both hemispheres 63.4
1933 Female, age 85, both hemispheres 62.3
1850 Male, age 80, both hemispheres 61.6
2250 Female, age 67, right hemisphere 61.0
2532 Female, age 72, left hemisphere 60.6
1990 Female, age 91, right hemisphere 58.4
2622 Female, age 67, right hemisphere 58.0
2692 Male, age 74, both hemispheres 53.8
Perirhinal gyrus
nTPM: 60.8
1841 Female, age 85, right hemisphere 63.2
1794 Male, age 80, right hemisphere 62.2
1847 Female, age 91, left hemisphere 61.7
2521 Female, age 94, right hemisphere 61.7
2848 Male, age 76, right hemisphere 54.9
Subiculum
nTPM: 64.0
1901 Male, age 80, both hemispheres 71.1
2729 Female, age 91, right hemisphere 67.3
1977 Female, age 85, both hemispheres 66.1
2042 Male, age 76, both hemispheres 62.4
2619 Male, age 74, both hemispheres 60.6
2438 Female, age 94, left hemisphere 56.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 80.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 80.8
Samples: 197

Max nTPM: 175.6
Min nTPM: 28.4
Std nTPM: 22.3
Median nTPM: 79.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 175.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 140.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 134.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 128.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 127.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 125.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 124.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 123.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 122.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 121.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 117.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 156.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 156.5
FF:10169-103B7 60 years, female 202.9
FF:10153-102I9 76 years, female 110.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 42.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 42.2
Samples: 4

Max nTPM: 51.3
Min nTPM: 34.7
Sample A Female 51.3
Sample B Female 44.8
Sample C Male 34.7
Sample D Male 38.1
Entorhinal cortex
nTPM: 36.7
Samples: 4

Max nTPM: 43.5
Min nTPM: 29.1
Sample A Female 35.6
Sample B Female 38.6
Sample C Male 43.5
Sample D Male 29.1
Subiculum
nTPM: 37.3
Samples: 4

Max nTPM: 47.4
Min nTPM: 31.7
Sample A Female 47.4
Sample B Female 36.6
Sample C Male 33.6
Sample D Male 31.7
Ventral hippocampus
nTPM: 41.6
Samples: 4

Max nTPM: 44.9
Min nTPM: 38.5
Sample A Female 43.7
Sample B Female 38.5
Sample C Male 44.9
Sample D Male 39.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 93.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 93.0
Samples: 4

Max nTPM: 102.9
Min nTPM: 84.1
Sample A Male 84.1
Sample B Male 94.8
Sample C Female 90.1
Sample D Female 102.9
Hippocampal formation
nTPM: 82.9
Samples: 4

Max nTPM: 92.4
Min nTPM: 75.4
Sample A Male 92.4
Sample B Male 80.2
Sample C Female 83.7
Sample D Female 75.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.9
75651166 Antisense, RP_060518_01_C01, Mouse strain C57BL/6J (56 days, male) 1.3
74990503 Antisense, RP_060410_01_B04, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.