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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:790.0 nTPM
HPA:790.0 nTPM
GTEx:862.3 nTPM
FANTOM5:328.4 Scaled Tags Per Million
Pig:9.1 nTPM
Mouse:223.6 nTPM
Allen mouse:15.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 790.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 769.4
2828 Female, age 72, unknown 791.5
1870 Female, age 42, unknown 783.6
2411 Female, age 72, unknown 782.8
1827 Male, age 72, unknown 777.6
1833 Male, age 53, unknown 775.0
1830 Male, age 51, unknown 771.1
2666 Male, age 74, left hemisphere 766.7
2019 Male, age 18, unknown 763.6
2586 Male, age 75, left hemisphere 751.0
2219 Male, age 76, both hemispheres 730.6
Dorsal raphe nucleus
nTPM: 782.7
2298 Female, age 72, unknown 809.3
2750 Male, age 76, both hemispheres 785.6
1828 Male, age 53, unknown 779.1
2016 Female, age 72, unknown 772.5
2047 Male, age 72, unknown 766.7
Inferior colliculus
nTPM: 763.3
2097 Female, age 72, unknown 785.3
1890 Male, age 53, unknown 758.9
2849 Male, age 72, unknown 756.1
1848 Female, age 42, unknown 752.8
Median raphe nucleus
nTPM: 790.0
2220 Male, age 76, midline 790.0
Pedunculopontine tegmental nucleus
nTPM: 784.3
2338 Male, age 61, both hemispheres 797.2
2334 Male, age 80, both hemispheres 785.0
1921 Female, age 85, both hemispheres 770.6
Periaquaductal grey, anterior
nTPM: 760.5
1947 Male, age 18, unknown 768.4
1795 Male, age 51, unknown 759.2
2502 Female, age 75, unknown 754.0
Periaquaductal grey, dorsal
nTPM: 761.2
2850 Male, age 76, both hemispheres 774.7
1840 Male, age 53, unknown 765.3
1831 Male, age 72, unknown 759.8
2464 Female, age 72, unknown 744.8
Periaquaductal grey, lateral
nTPM: 762.5
2053 Male, age 18, unknown 766.2
2140 Male, age 76, both hemispheres 761.2
2272 Male, age 74, both hemispheres 760.0
Pretectal area
nTPM: 773.8
1817 Female, age 42, unknown 791.4
2667 Female, age 75, unknown 788.9
1815 Male, age 53, unknown 783.3
2273 Male, age 74, both hemispheres 778.9
1816 Male, age 51, unknown 777.3
2224 Female, age 72, unknown 775.9
2825 Male, age 18, unknown 771.3
2007 Male, age 72, unknown 769.8
1944 Female, age 72, unknown 768.9
2316 Male, age 76, right hemisphere 758.8
2407 Male, age 75, both hemispheres 747.2
Red nucleus
nTPM: 775.0
1821 Female, age 72, unknown 821.2
2503 Female, age 72, unknown 790.5
2823 Male, age 76, right hemisphere 788.7
1904 Male, age 53, unknown 785.2
2227 Male, age 72, unknown 778.7
1865 Male, age 51, unknown 778.2
1954 Female, age 42, unknown 776.9
2769 Male, age 72, unknown 775.4
2725 Female, age 75, unknown 766.7
2785 Male, age 18, unknown 766.2
2588 Male, age 74, left hemisphere 744.9
2584 Male, age 75, left hemisphere 727.1
Substantia nigra
nTPM: 780.7
1916 Female, age 42, unknown 814.0
2699 Male, age 18, unknown 795.8
1851 Male, age 51, unknown 795.2
1889 Female, age 72, unknown 786.6
2241 Male, age 72, unknown 785.0
2665 Male, age 74, both hemispheres 782.7
2409 Female, age 72, unknown 766.6
1941 Male, age 53, unknown 766.3
2590 Female, age 75, unknown 763.9
2583 Male, age 75, right hemisphere 751.3
Superior colliculus
nTPM: 771.2
2587 Male, age 74, left hemisphere 791.4
2668 Female, age 75, unknown 786.4
1913 Female, age 42, unknown 785.8
1995 Male, age 72, unknown 776.9
1796 Male, age 53, unknown 770.9
2087 Female, age 72, unknown 768.0
2261 Male, age 18, unknown 758.8
1839 Male, age 51, unknown 758.4
1895 Male, age 76, right hemisphere 757.7
2664 Male, age 75, both hemispheres 757.6
Ventral tegmental area
nTPM: 785.2
1915 Female, age 42, unknown 806.6
2410 Female, age 72, unknown 800.9
2218 Male, age 76, both hemispheres 782.9
2223 Female, age 72, unknown 775.0
1942 Male, age 51, unknown 773.2
2021 Male, age 53, unknown 772.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 862.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 862.3
Samples: 139

Max nTPM: 1632.1
Min nTPM: 533.2
Std nTPM: 178.4
Median nTPM: 843.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1632.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1474.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1380.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1310.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1298.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1198.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1179.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1154.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1143.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1140.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1107.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 328.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 328.4
FF:10158-103A5 76 years, female 328.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.1
Pig sample Sample description nTPM
Midbrain
nTPM: 5.8
Samples: 4

Max nTPM: 7.9
Min nTPM: 2.6
Sample A Female 2.6
Sample B Female 7.9
Sample C Male 5.6
Sample D Male 7.1
Periaqueductal gray
nTPM: 7.9
Samples: 3

Max nTPM: 10.5
Min nTPM: 3.4
Sample B Female 9.7
Sample C Male 3.4
Sample D Male 10.5
Substantia nigra
nTPM: 9.1
Samples: 4

Max nTPM: 17.3
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 7.9
Sample C Male 7.6
Sample D Male 17.3
Superior colliculi
nTPM: 5.4
Samples: 4

Max nTPM: 6.7
Min nTPM: 2.8
Sample A Female 2.8
Sample B Female 5.3
Sample C Male 6.7
Sample D Male 6.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 223.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 223.6
Samples: 4

Max nTPM: 242.4
Min nTPM: 211.4
Sample A Male 242.4
Sample B Male 219.3
Sample C Female 211.4
Sample D Female 221.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.5
2245 Antisense, RP_040420_01_B03, Mouse strain C57BL/6J (56 days, male) 15.5
2246 Antisense, RP_040420_01_B03, Mouse strain C57BL/6J (56 days, male) 15.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.