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HARS1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:67.0 nTPM
HPA:67.0 nTPM
GTEx:59.6 nTPM
FANTOM5:93.1 Scaled Tags Per Million
Pig:17.6 nTPM
Mouse:96.8 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA036539
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 67.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 63.5
2846 Female, age 79, unknown 66.1
2481 Female, age 94, left hemisphere 64.7
1857 Female, age 85, left hemisphere 64.2
1781 Male, age 74, unknown 64.1
1854 Male, age 80, left hemisphere 63.7
2288 Male, age 75, left hemisphere 63.7
2290 Female, age 72, unknown 62.9
2289 Male, age 61, right hemisphere 58.8
Claustrum
nTPM: 62.4
2198 Male, age 80, both hemispheres 66.5
2491 Male, age 75, both hemispheres 65.2
2568 Male, age 61, both hemispheres 64.9
2284 Female, age 91, both hemispheres 63.2
2392 Female, age 94, both hemispheres 62.3
2196 Female, age 79, unknown 60.8
1956 Male, age 74, unknown 60.6
2645 Female, age 72, unknown 60.2
2292 Female, age 85, both hemispheres 57.5
Globus pallidus, externus
nTPM: 60.1
2772 Female, age 79, unknown 65.0
2395 Male, age 75, both hemispheres 62.7
1996 Male, age 80, right hemisphere 59.6
2646 Male, age 61, right hemisphere 57.2
2567 Female, age 72, unknown 56.1
Globus pallidus, internus
nTPM: 60.3
2287 Male, age 75, right hemisphere 66.0
2483 Female, age 94, right hemisphere 64.9
1818 Male, age 74, unknown 61.7
2778 Female, age 91, both hemispheres 59.0
2037 Male, age 80, right hemisphere 58.6
2566 Female, age 72, unknown 57.0
2111 Female, age 85, right hemisphere 55.1
Nucleus accumbens
nTPM: 63.1
1856 Female, age 91, right hemisphere 71.3
2286 Male, age 75, left hemisphere 65.2
2698 Female, age 72, unknown 62.9
2824 Male, age 61, right hemisphere 62.7
1783 Male, age 74, unknown 62.6
2391 Female, age 94, left hemisphere 62.5
1806 Female, age 85, left hemisphere 62.2
2732 Male, age 80, right hemisphere 55.9
Nucleus basalis of Meynert
nTPM: 61.8
2821 Male, age 75, both hemispheres 65.9
2393 Male, age 80, right hemisphere 62.6
2484 Female, age 94, left hemisphere 61.5
2569 Male, age 61, both hemispheres 57.2
Nucleus of the diagonal band
nTPM: 64.6
1812 Female, age 91, both hemispheres 69.3
2775 Male, age 80, right hemisphere 67.2
2029 Male, age 61, right hemisphere 66.2
2195 Female, age 85, both hemispheres 62.7
1979 Male, age 74, unknown 57.6
Olfactory tubercle
nTPM: 67.0
2487 Female, age 94, left hemisphere 68.1
1998 Female, age 91, both hemispheres 67.8
1846 Male, age 80, right hemisphere 66.9
2856 Male, age 75, right hemisphere 65.0
Putamen
nTPM: 64.0
1838 Male, age 80, right hemisphere 66.5
2482 Female, age 94, left hemisphere 65.7
1937 Female, age 91, right hemisphere 64.9
2466 Female, age 79, unknown 64.9
1829 Male, age 74, unknown 64.7
2647 Male, age 75, left hemisphere 64.4
2489 Female, age 72, unknown 57.2
Septal nuclei
nTPM: 62.2
2629 Female, age 94, right hemisphere 67.6
2031 Female, age 72, unknown 66.6
1960 Male, age 74, unknown 65.2
2009 Female, age 91, both hemispheres 63.0
2059 Female, age 85, both hemispheres 58.6
2199 Male, age 80, right hemisphere 57.3
2394 Male, age 61, left hemisphere 57.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 59.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 57.2
Samples: 246

Max nTPM: 94.8
Min nTPM: 30.5
Std nTPM: 13.9
Median nTPM: 56.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 94.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 92.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 90.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 89.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 88.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 87.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 85.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 84.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 83.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 82.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 82.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 59.3
Samples: 246

Max nTPM: 98.2
Min nTPM: 29.3
Std nTPM: 13.0
Median nTPM: 59.8
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 98.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 96.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 95.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 90.5
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 90.4
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 87.5
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 87.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 86.8
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 85.0
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 83.6
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 82.0
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Brain - Putamen (basal ganglia)
Average nTPM: 59.6
Samples: 205

Max nTPM: 96.5
Min nTPM: 26.6
Std nTPM: 14.9
Median nTPM: 58.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 96.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 96.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 94.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 93.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 92.6
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 91.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 89.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 88.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 87.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 84.2
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 83.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 91.6
FF:10164-103B2 76 years, female 91.6
Globus pallidus
Scaled Tags Per Million: 59.8
FF:10175-103C4 60 years, female 59.9
FF:10161-103A8 76 years, female 59.6
Nucleus accumbens
Scaled Tags Per Million: 93.1
FF:10037-101F1 23-56 years, mixed 93.1
Putamen
Scaled Tags Per Million: 87.7
FF:10176-103C5 60 years, female 87.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.6
Pig sample Sample description nTPM
Caudate
nTPM: 17.6
Samples: 4

Max nTPM: 21.1
Min nTPM: 15.6
Sample A Female 15.6
Sample B Female 17.7
Sample C Male 21.1
Sample D Male 15.8
Putamen
nTPM: 17.1
Samples: 4

Max nTPM: 24.3
Min nTPM: 12.7
Sample A Female 12.7
Sample B Female 15.4
Sample C Male 24.3
Sample D Male 16.0
Septum
nTPM: 17.2
Samples: 4

Max nTPM: 19.2
Min nTPM: 15.6
Sample A Female 18.2
Sample B Female 15.8
Sample C Male 19.2
Sample D Male 15.6
Ventral pallidum
nTPM: 16.9
Samples: 4

Max nTPM: 20.1
Min nTPM: 13.9
Sample A Female 16.3
Sample B Female 17.3
Sample C Male 20.1
Sample D Male 13.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 96.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 82.1
Samples: 4

Max nTPM: 84.5
Min nTPM: 79.3
Sample A Male 80.5
Sample B Male 79.3
Sample C Female 84.0
Sample D Female 84.5
Septum
nTPM: 96.8
Samples: 4

Max nTPM: 100.9
Min nTPM: 90.7
Sample A Male 100.4
Sample B Male 100.9
Sample C Female 95.1
Sample D Female 90.7
Ventral forebrain
nTPM: 88.5
Samples: 4

Max nTPM: 89.7
Min nTPM: 88.1
Sample A Male 88.1
Sample B Male 89.7
Sample C Female 88.1
Sample D Female 88.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
554 Antisense, RP_040304_01_03, Mouse strain C57BL/6J (56 days, male) 0.1
555 Antisense, RP_040304_01_03, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
554 Antisense, RP_040304_01_03, Mouse strain C57BL/6J (56 days, male) 0.1
555 Antisense, RP_040304_01_03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.