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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:1.8 nTPM
HPA:1.8 nTPM
GTEx:25.5 nTPM
FANTOM5:12.8 Scaled Tags Per Million
Pig:8.9 nTPM
Mouse:90.6 nTPM
Allen mouse:5.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041111
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.6
1857 Female, age 85, left hemisphere 2.1
2289 Male, age 61, right hemisphere 2.0
2290 Female, age 72, unknown 1.9
1854 Male, age 80, left hemisphere 1.6
2846 Female, age 79, unknown 1.4
1781 Male, age 74, unknown 1.3
2481 Female, age 94, left hemisphere 1.2
2288 Male, age 75, left hemisphere 1.0
Claustrum
nTPM: 1.8
2392 Female, age 94, both hemispheres 2.2
2198 Male, age 80, both hemispheres 2.0
2491 Male, age 75, both hemispheres 2.0
1956 Male, age 74, unknown 1.9
2196 Female, age 79, unknown 1.8
2645 Female, age 72, unknown 1.8
2284 Female, age 91, both hemispheres 1.6
2568 Male, age 61, both hemispheres 1.6
2292 Female, age 85, both hemispheres 1.5
Globus pallidus, externus
nTPM: 1.3
2395 Male, age 75, both hemispheres 1.8
2567 Female, age 72, unknown 1.3
2772 Female, age 79, unknown 1.2
2646 Male, age 61, right hemisphere 1.1
1996 Male, age 80, right hemisphere 1.0
Globus pallidus, internus
nTPM: 1.4
2778 Female, age 91, both hemispheres 1.8
2111 Female, age 85, right hemisphere 1.6
2287 Male, age 75, right hemisphere 1.6
2566 Female, age 72, unknown 1.6
1818 Male, age 74, unknown 1.5
2037 Male, age 80, right hemisphere 1.0
2483 Female, age 94, right hemisphere 0.9
Nucleus accumbens
nTPM: 1.7
1856 Female, age 91, right hemisphere 2.3
2732 Male, age 80, right hemisphere 1.9
2824 Male, age 61, right hemisphere 1.9
1806 Female, age 85, left hemisphere 1.8
1783 Male, age 74, unknown 1.7
2286 Male, age 75, left hemisphere 1.4
2391 Female, age 94, left hemisphere 1.4
2698 Female, age 72, unknown 1.3
Nucleus basalis of Meynert
nTPM: 1.4
2393 Male, age 80, right hemisphere 1.7
2484 Female, age 94, left hemisphere 1.6
2821 Male, age 75, both hemispheres 1.5
2569 Male, age 61, both hemispheres 1.0
Nucleus of the diagonal band
nTPM: 1.8
2195 Female, age 85, both hemispheres 2.2
2029 Male, age 61, right hemisphere 2.0
2775 Male, age 80, right hemisphere 1.8
1812 Female, age 91, both hemispheres 1.4
1979 Male, age 74, unknown 1.4
Olfactory tubercle
nTPM: 1.8
1998 Female, age 91, both hemispheres 2.1
2856 Male, age 75, right hemisphere 1.8
1846 Male, age 80, right hemisphere 1.7
2487 Female, age 94, left hemisphere 1.7
Putamen
nTPM: 1.6
1829 Male, age 74, unknown 1.7
1838 Male, age 80, right hemisphere 1.7
2489 Female, age 72, unknown 1.7
1937 Female, age 91, right hemisphere 1.6
2466 Female, age 79, unknown 1.6
2647 Male, age 75, left hemisphere 1.5
2482 Female, age 94, left hemisphere 1.3
Septal nuclei
nTPM: 1.8
2199 Male, age 80, right hemisphere 2.0
2009 Female, age 91, both hemispheres 1.9
2629 Female, age 94, right hemisphere 1.9
2031 Female, age 72, unknown 1.8
2394 Male, age 61, left hemisphere 1.8
2059 Female, age 85, both hemispheres 1.7
1960 Male, age 74, unknown 1.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.8
Samples: 246

Max nTPM: 69.1
Min nTPM: 11.1
Std nTPM: 6.1
Median nTPM: 22.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 69.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 44.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 40.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 39.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 35.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 33.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 33.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 33.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 33.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 33.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 33.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.5
Samples: 246

Max nTPM: 90.4
Min nTPM: 13.3
Std nTPM: 8.8
Median nTPM: 23.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 90.4
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 64.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 61.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 56.8
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 54.6
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 53.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 51.4
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 50.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 44.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 42.7
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 41.6
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Brain - Putamen (basal ganglia)
Average nTPM: 24.1
Samples: 205

Max nTPM: 65.7
Min nTPM: 9.9
Std nTPM: 7.1
Median nTPM: 22.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 65.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 57.5
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 52.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 40.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 40.4
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 38.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 37.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 37.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 36.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 36.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 36.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.0
FF:10164-103B2 76 years, female 9.0
Globus pallidus
Scaled Tags Per Million: 8.9
FF:10175-103C4 60 years, female 11.8
FF:10161-103A8 76 years, female 5.9
Nucleus accumbens
Scaled Tags Per Million: 8.3
FF:10037-101F1 23-56 years, mixed 8.3
Putamen
Scaled Tags Per Million: 12.8
FF:10176-103C5 60 years, female 12.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.9
Pig sample Sample description nTPM
Caudate
nTPM: 8.5
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.1
Sample A Female 8.1
Sample B Female 9.2
Sample C Male 9.4
Sample D Male 7.1
Putamen
nTPM: 7.4
Samples: 4

Max nTPM: 9.0
Min nTPM: 5.8
Sample A Female 7.5
Sample B Female 5.8
Sample C Male 9.0
Sample D Male 7.4
Septum
nTPM: 8.9
Samples: 4

Max nTPM: 10.4
Min nTPM: 6.7
Sample A Female 9.3
Sample B Female 9.1
Sample C Male 10.4
Sample D Male 6.7
Ventral pallidum
nTPM: 8.1
Samples: 4

Max nTPM: 9.1
Min nTPM: 7.2
Sample A Female 7.2
Sample B Female 8.9
Sample C Male 9.1
Sample D Male 7.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 90.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 70.5
Samples: 4

Max nTPM: 85.2
Min nTPM: 59.0
Sample A Male 76.2
Sample B Male 85.2
Sample C Female 59.0
Sample D Female 61.7
Septum
nTPM: 90.6
Samples: 4

Max nTPM: 100.2
Min nTPM: 82.0
Sample A Male 91.3
Sample B Male 100.2
Sample C Female 88.7
Sample D Female 82.0
Ventral forebrain
nTPM: 78.6
Samples: 4

Max nTPM: 97.6
Min nTPM: 66.5
Sample A Male 74.2
Sample B Male 76.2
Sample C Female 97.6
Sample D Female 66.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.2
1944 Antisense, RP_040420_01_B08, Mouse strain C57BL/6J (56 days, male) 5.2
1945 Antisense, RP_040420_01_B08, Mouse strain C57BL/6J (56 days, male) 4.9
Pallidum
Expression energy: 2.4
1944 Antisense, RP_040420_01_B08, Mouse strain C57BL/6J (56 days, male) 2.4
1945 Antisense, RP_040420_01_B08, Mouse strain C57BL/6J (56 days, male) 1.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.