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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:2.1 nTPM
HPA:2.1 nTPM
GTEx:24.2 nTPM
FANTOM5:7.6 Scaled Tags Per Million
Pig:11.4 nTPM
Mouse:66.4 nTPM
Allen mouse:2.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041111
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 2.1
Sample id Sample description nTPM
Hippocampus
nTPM: 1.8
1855 Male, age 76, left hemisphere 2.6
1911 Female, age 85, right hemisphere 2.1
2148 Female, age 91, left hemisphere 2.0
2529 Female, age 94, left hemisphere 1.7
2621 Female, age 67, right hemisphere 1.3
1898 Male, age 80, left hemisphere 1.2
Dentate gyrus
nTPM: 1.9
2531 Female, age 67, both hemispheres 2.1
1927 Female, age 91, both hemispheres 2.0
2010 Male, age 76, both hemispheres 2.0
2246 Female, age 85, both hemispheres 2.0
2528 Male, age 74, both hemispheres 1.8
2530 Female, age 94, left hemisphere 1.4
Entorhinal gyrus
nTPM: 1.7
2686 Male, age 75, right hemisphere 2.2
1938 Female, age 85, left hemisphere 2.0
1787 Male, age 76, left hemisphere 1.8
2764 Male, age 80, right hemisphere 1.7
2117 Female, age 91, right hemisphere 1.3
2613 Female, age 94, left hemisphere 1.3
Hippocampus, CA1
nTPM: 2.1
2045 Male, age 76, both hemispheres 3.5
2082 Female, age 91, right hemisphere 2.0
2749 Male, age 80, left hemisphere 1.9
2527 Male, age 74, both hemispheres 1.6
1873 Female, age 85, both hemispheres 1.5
Hippocampus, CA2
nTPM: 1.8
1892 Male, age 76, both hemispheres 2.2
2113 Female, age 91, right hemisphere 2.2
2437 Female, age 94, left hemisphere 2.1
1940 Female, age 85, left hemisphere 1.7
2249 Male, age 74, both hemispheres 1.5
1963 Male, age 80, left hemisphere 1.3
Hippocampus, CA3
nTPM: 1.8
2137 Male, age 80, left hemisphere 2.1
2620 Female, age 94, left hemisphere 1.9
1867 Male, age 76, both hemispheres 1.8
1891 Female, age 85, both hemispheres 1.8
2436 Male, age 74, both hemispheres 1.8
2861 Female, age 67, both hemispheres 1.6
Parahippocampal cortex
nTPM: 2.0
2245 Female, age 91, both hemispheres 2.7
2693 Female, age 94, both hemispheres 2.4
2692 Male, age 74, both hemispheres 2.3
2250 Female, age 67, right hemisphere 2.2
1933 Female, age 85, both hemispheres 2.0
2018 Male, age 76, both hemispheres 1.9
1850 Male, age 80, both hemispheres 1.8
1990 Female, age 91, right hemisphere 1.8
2532 Female, age 72, left hemisphere 1.5
2622 Female, age 67, right hemisphere 1.4
Perirhinal gyrus
nTPM: 2.0
2848 Male, age 76, right hemisphere 2.4
1794 Male, age 80, right hemisphere 2.1
1841 Female, age 85, right hemisphere 2.1
1847 Female, age 91, left hemisphere 1.8
2521 Female, age 94, right hemisphere 1.5
Subiculum
nTPM: 1.8
2729 Female, age 91, right hemisphere 2.5
2042 Male, age 76, both hemispheres 2.4
1977 Female, age 85, both hemispheres 1.7
1901 Male, age 80, both hemispheres 1.5
2619 Male, age 74, both hemispheres 1.4
2438 Female, age 94, left hemisphere 1.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 24.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 24.2
Samples: 197

Max nTPM: 37.4
Min nTPM: 14.2
Std nTPM: 4.5
Median nTPM: 23.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 37.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 35.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 35.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 35.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 34.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 34.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 34.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 34.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 33.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 33.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 33.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 7.6
FF:10169-103B7 60 years, female 8.3
FF:10153-102I9 76 years, female 7.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 11.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 9.8
Samples: 4

Max nTPM: 12.3
Min nTPM: 7.8
Sample A Female 12.3
Sample B Female 10.1
Sample C Male 9.0
Sample D Male 7.8
Entorhinal cortex
nTPM: 9.4
Samples: 4

Max nTPM: 10.6
Min nTPM: 7.9
Sample A Female 10.0
Sample B Female 9.0
Sample C Male 10.6
Sample D Male 7.9
Subiculum
nTPM: 10.9
Samples: 4

Max nTPM: 13.4
Min nTPM: 8.9
Sample A Female 13.4
Sample B Female 10.3
Sample C Male 11.0
Sample D Male 8.9
Ventral hippocampus
nTPM: 11.4
Samples: 4

Max nTPM: 16.0
Min nTPM: 8.7
Sample A Female 11.7
Sample B Female 9.1
Sample C Male 16.0
Sample D Male 8.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 66.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 64.3
Samples: 4

Max nTPM: 66.1
Min nTPM: 62.8
Sample A Male 65.1
Sample B Male 63.1
Sample C Female 62.8
Sample D Female 66.1
Hippocampal formation
nTPM: 66.4
Samples: 4

Max nTPM: 70.2
Min nTPM: 62.8
Sample A Male 62.8
Sample B Male 67.1
Sample C Female 65.6
Sample D Female 70.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
1944 Antisense, RP_040420_01_B08, Mouse strain C57BL/6J (56 days, male) 2.8
1945 Antisense, RP_040420_01_B08, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.