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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.9 nTPM
HPA:21.9 nTPM
GTEx:25.5 nTPM
FANTOM5:73.9 Scaled Tags Per Million
Pig:24.0 nTPM
Mouse:24.5 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.9
2219 Male, age 76, both hemispheres 48.4
2666 Male, age 74, left hemisphere 29.1
2586 Male, age 75, left hemisphere 24.0
1833 Male, age 53, unknown 22.9
1830 Male, age 51, unknown 21.5
1870 Female, age 42, unknown 17.4
2828 Female, age 72, unknown 16.8
1827 Male, age 72, unknown 16.0
2411 Female, age 72, unknown 12.2
2019 Male, age 18, unknown 11.1
Dorsal raphe nucleus
nTPM: 12.8
2016 Female, age 72, unknown 17.6
2750 Male, age 76, both hemispheres 15.7
1828 Male, age 53, unknown 14.2
2047 Male, age 72, unknown 12.4
2298 Female, age 72, unknown 4.1
Inferior colliculus
nTPM: 20.6
2849 Male, age 72, unknown 34.8
1848 Female, age 42, unknown 19.9
1890 Male, age 53, unknown 19.6
2097 Female, age 72, unknown 8.1
Median raphe nucleus
nTPM: 14.0
2220 Male, age 76, midline 14.0
Pedunculopontine tegmental nucleus
nTPM: 17.4
1921 Female, age 85, both hemispheres 17.8
2334 Male, age 80, both hemispheres 17.5
2338 Male, age 61, both hemispheres 17.0
Periaquaductal grey, anterior
nTPM: 14.1
2502 Female, age 75, unknown 16.7
1947 Male, age 18, unknown 14.7
1795 Male, age 51, unknown 11.0
Periaquaductal grey, dorsal
nTPM: 21.1
1840 Male, age 53, unknown 22.7
2850 Male, age 76, both hemispheres 22.7
1831 Male, age 72, unknown 19.6
2464 Female, age 72, unknown 19.3
Periaquaductal grey, lateral
nTPM: 15.6
2140 Male, age 76, both hemispheres 18.4
2053 Male, age 18, unknown 18.1
2272 Male, age 74, both hemispheres 10.2
Pretectal area
nTPM: 14.6
2407 Male, age 75, both hemispheres 21.5
2825 Male, age 18, unknown 20.7
2316 Male, age 76, right hemisphere 19.0
1815 Male, age 53, unknown 16.5
2224 Female, age 72, unknown 15.4
1944 Female, age 72, unknown 12.8
2667 Female, age 75, unknown 12.6
1816 Male, age 51, unknown 11.9
1817 Female, age 42, unknown 11.7
2007 Male, age 72, unknown 11.4
2273 Male, age 74, both hemispheres 7.4
Red nucleus
nTPM: 21.8
2503 Female, age 72, unknown 30.1
2588 Male, age 74, left hemisphere 29.5
2725 Female, age 75, unknown 27.1
1865 Male, age 51, unknown 23.5
1904 Male, age 53, unknown 22.3
2584 Male, age 75, left hemisphere 22.2
2823 Male, age 76, right hemisphere 19.7
1954 Female, age 42, unknown 19.4
2769 Male, age 72, unknown 19.1
2227 Male, age 72, unknown 17.8
1821 Female, age 72, unknown 17.1
2785 Male, age 18, unknown 14.3
Substantia nigra
nTPM: 20.2
2699 Male, age 18, unknown 37.1
2665 Male, age 74, both hemispheres 28.2
2241 Male, age 72, unknown 22.6
1851 Male, age 51, unknown 21.9
1916 Female, age 42, unknown 18.1
2583 Male, age 75, right hemisphere 15.8
2409 Female, age 72, unknown 15.6
2590 Female, age 75, unknown 15.3
1941 Male, age 53, unknown 14.9
1889 Female, age 72, unknown 12.1
Superior colliculus
nTPM: 19.3
1913 Female, age 42, unknown 24.1
1895 Male, age 76, right hemisphere 23.9
1839 Male, age 51, unknown 22.7
2587 Male, age 74, left hemisphere 22.7
2664 Male, age 75, both hemispheres 22.2
1995 Male, age 72, unknown 19.8
2668 Female, age 75, unknown 17.9
1796 Male, age 53, unknown 15.6
2261 Male, age 18, unknown 12.8
2087 Female, age 72, unknown 11.0
Ventral tegmental area
nTPM: 18.0
2218 Male, age 76, both hemispheres 19.4
2223 Female, age 72, unknown 19.3
2021 Male, age 53, unknown 18.6
1915 Female, age 42, unknown 18.5
1942 Male, age 51, unknown 16.7
2410 Female, age 72, unknown 15.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.5
Samples: 139

Max nTPM: 50.1
Min nTPM: 12.0
Std nTPM: 6.1
Median nTPM: 24.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 50.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 49.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 41.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 38.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 37.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 37.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 35.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 34.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 34.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 34.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 34.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.9
FF:10158-103A5 76 years, female 73.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.0
Pig sample Sample description nTPM
Midbrain
nTPM: 23.9
Samples: 4

Max nTPM: 25.3
Min nTPM: 22.9
Sample A Female 25.3
Sample B Female 22.9
Sample C Male 24.5
Sample D Male 23.0
Periaqueductal gray
nTPM: 23.0
Samples: 3

Max nTPM: 24.9
Min nTPM: 22.0
Sample B Female 22.0
Sample C Male 24.9
Sample D Male 22.1
Substantia nigra
nTPM: 23.3
Samples: 4

Max nTPM: 25.3
Min nTPM: 20.4
Sample A Female 20.4
Sample B Female 22.0
Sample C Male 25.3
Sample D Male 25.3
Superior colliculi
nTPM: 21.1
Samples: 4

Max nTPM: 23.3
Min nTPM: 18.2
Sample A Female 20.7
Sample B Female 18.2
Sample C Male 22.0
Sample D Male 23.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.5
Samples: 4

Max nTPM: 26.6
Min nTPM: 19.3
Sample A Male 19.3
Sample B Male 26.3
Sample C Female 25.8
Sample D Female 26.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
68844701 Antisense, RP_050222_02_C03, Mouse strain C57BL/6J (56 days, male) 4.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.