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NINJ2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.8 nTPM
HPA:30.8 nTPM
GTEx:18.7 nTPM
FANTOM5:46.8 Scaled Tags Per Million
Mouse:10.2 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 30.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 18.7
2288 Male, age 75, left hemisphere 24.9
2846 Female, age 79, unknown 18.8
1854 Male, age 80, left hemisphere 18.4
2481 Female, age 94, left hemisphere 18.3
1781 Male, age 74, unknown 18.0
2290 Female, age 72, unknown 17.9
2289 Male, age 61, right hemisphere 17.0
1857 Female, age 85, left hemisphere 16.0
Claustrum
nTPM: 23.4
1956 Male, age 74, unknown 28.5
2292 Female, age 85, both hemispheres 28.3
2392 Female, age 94, both hemispheres 24.4
2568 Male, age 61, both hemispheres 22.9
2198 Male, age 80, both hemispheres 22.3
2491 Male, age 75, both hemispheres 22.2
2196 Female, age 79, unknown 22.0
2284 Female, age 91, both hemispheres 20.6
2645 Female, age 72, unknown 19.9
Globus pallidus, externus
nTPM: 27.9
1996 Male, age 80, right hemisphere 32.2
2772 Female, age 79, unknown 27.5
2646 Male, age 61, right hemisphere 27.4
2567 Female, age 72, unknown 26.4
2395 Male, age 75, both hemispheres 26.0
Globus pallidus, internus
nTPM: 30.8
2111 Female, age 85, right hemisphere 41.5
2778 Female, age 91, both hemispheres 36.5
2037 Male, age 80, right hemisphere 29.5
2566 Female, age 72, unknown 29.1
1818 Male, age 74, unknown 29.0
2287 Male, age 75, right hemisphere 28.7
2483 Female, age 94, right hemisphere 21.0
Nucleus accumbens
nTPM: 21.5
2391 Female, age 94, left hemisphere 27.6
2286 Male, age 75, left hemisphere 24.8
2732 Male, age 80, right hemisphere 23.3
2698 Female, age 72, unknown 23.2
1783 Male, age 74, unknown 19.2
1806 Female, age 85, left hemisphere 18.8
2824 Male, age 61, right hemisphere 18.5
1856 Female, age 91, right hemisphere 17.0
Nucleus basalis of Meynert
nTPM: 21.6
2569 Male, age 61, both hemispheres 24.4
2821 Male, age 75, both hemispheres 22.7
2393 Male, age 80, right hemisphere 20.4
2484 Female, age 94, left hemisphere 19.0
Nucleus of the diagonal band
nTPM: 16.3
1812 Female, age 91, both hemispheres 17.0
2029 Male, age 61, right hemisphere 16.8
1979 Male, age 74, unknown 16.5
2775 Male, age 80, right hemisphere 15.7
2195 Female, age 85, both hemispheres 15.6
Olfactory tubercle
nTPM: 17.0
1998 Female, age 91, both hemispheres 17.2
2856 Male, age 75, right hemisphere 17.1
2487 Female, age 94, left hemisphere 17.0
1846 Male, age 80, right hemisphere 16.7
Putamen
nTPM: 20.1
1829 Male, age 74, unknown 22.6
2482 Female, age 94, left hemisphere 22.5
2489 Female, age 72, unknown 21.0
2647 Male, age 75, left hemisphere 20.3
1937 Female, age 91, right hemisphere 20.0
2466 Female, age 79, unknown 18.1
1838 Male, age 80, right hemisphere 16.0
Septal nuclei
nTPM: 18.5
2394 Male, age 61, left hemisphere 23.6
2199 Male, age 80, right hemisphere 20.3
2059 Female, age 85, both hemispheres 18.5
2629 Female, age 94, right hemisphere 18.0
2009 Female, age 91, both hemispheres 17.0
2031 Female, age 72, unknown 16.7
1960 Male, age 74, unknown 15.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.8
Samples: 246

Max nTPM: 66.2
Min nTPM: 2.8
Std nTPM: 7.6
Median nTPM: 11.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 66.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 39.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 39.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 30.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 30.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 29.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 29.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 28.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 28.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 27.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 27.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.9
Samples: 246

Max nTPM: 68.4
Min nTPM: 1.5
Std nTPM: 7.2
Median nTPM: 5.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 68.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 45.3
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 37.8
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 36.2
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 31.7
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 29.5
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 26.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 26.4
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 22.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 21.7
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 21.4
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Brain - Putamen (basal ganglia)
Average nTPM: 18.7
Samples: 205

Max nTPM: 69.0
Min nTPM: 3.7
Std nTPM: 9.3
Median nTPM: 17.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 69.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 50.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 45.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 41.4
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 40.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 39.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 38.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 37.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 36.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 36.0
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 35.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 10.4
FF:10164-103B2 76 years, female 10.4
Globus pallidus
Scaled Tags Per Million: 46.8
FF:10175-103C4 60 years, female 55.2
FF:10161-103A8 76 years, female 38.4
Nucleus accumbens
Scaled Tags Per Million: 28.2
FF:10037-101F1 23-56 years, mixed 28.2
Putamen
Scaled Tags Per Million: 10.1
FF:10176-103C5 60 years, female 10.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.2
Samples: 4

Max nTPM: 10.8
Min nTPM: 9.5
Sample A Male 10.3
Sample B Male 9.5
Sample C Female 10.0
Sample D Female 10.8
Septum
nTPM: 9.0
Samples: 4

Max nTPM: 14.2
Min nTPM: 5.9
Sample A Male 5.9
Sample B Male 7.6
Sample C Female 8.4
Sample D Female 14.2
Ventral forebrain
nTPM: 6.4
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.9
Sample A Male 6.4
Sample B Male 6.0
Sample C Female 5.9
Sample D Female 7.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69782270 Antisense, RP_050505_02_F06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69782270 Antisense, RP_050505_02_F06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas project is funded
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