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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:282.1 nTPM
HPA:282.1 nTPM
GTEx:214.3 nTPM
FANTOM5:523.3 Scaled Tags Per Million
Pig:119.1 nTPM
Mouse:582.8 nTPM
Allen mouse:14.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 282.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 260.7
1833 Male, age 53, unknown 291.9
2411 Female, age 72, unknown 291.1
1830 Male, age 51, unknown 290.6
1870 Female, age 42, unknown 276.4
2828 Female, age 72, unknown 261.8
2019 Male, age 18, unknown 257.8
2586 Male, age 75, left hemisphere 240.8
1827 Male, age 72, unknown 236.0
2666 Male, age 74, left hemisphere 231.9
2219 Male, age 76, both hemispheres 228.9
Dorsal raphe nucleus
nTPM: 234.0
2750 Male, age 76, both hemispheres 274.5
2016 Female, age 72, unknown 241.7
1828 Male, age 53, unknown 230.5
2298 Female, age 72, unknown 216.0
2047 Male, age 72, unknown 207.1
Inferior colliculus
nTPM: 227.6
2849 Male, age 72, unknown 236.2
1848 Female, age 42, unknown 234.0
1890 Male, age 53, unknown 222.7
2097 Female, age 72, unknown 217.4
Median raphe nucleus
nTPM: 216.0
2220 Male, age 76, midline 216.0
Pedunculopontine tegmental nucleus
nTPM: 240.9
2334 Male, age 80, both hemispheres 252.5
1921 Female, age 85, both hemispheres 236.8
2338 Male, age 61, both hemispheres 233.3
Periaquaductal grey, anterior
nTPM: 220.4
2502 Female, age 75, unknown 228.1
1947 Male, age 18, unknown 222.4
1795 Male, age 51, unknown 210.8
Periaquaductal grey, dorsal
nTPM: 217.5
2464 Female, age 72, unknown 244.5
1831 Male, age 72, unknown 218.2
2850 Male, age 76, both hemispheres 204.5
1840 Male, age 53, unknown 203.0
Periaquaductal grey, lateral
nTPM: 220.3
2053 Male, age 18, unknown 230.3
2272 Male, age 74, both hemispheres 225.2
2140 Male, age 76, both hemispheres 205.4
Pretectal area
nTPM: 232.3
2316 Male, age 76, right hemisphere 261.4
1815 Male, age 53, unknown 258.6
2667 Female, age 75, unknown 246.3
2407 Male, age 75, both hemispheres 239.9
1817 Female, age 42, unknown 239.8
2825 Male, age 18, unknown 234.4
2273 Male, age 74, both hemispheres 224.1
2007 Male, age 72, unknown 223.5
2224 Female, age 72, unknown 219.3
1944 Female, age 72, unknown 204.5
1816 Male, age 51, unknown 203.8
Red nucleus
nTPM: 282.1
1904 Male, age 53, unknown 322.5
1821 Female, age 72, unknown 306.5
1865 Male, age 51, unknown 300.7
2823 Male, age 76, right hemisphere 296.5
2769 Male, age 72, unknown 293.1
2227 Male, age 72, unknown 292.9
2785 Male, age 18, unknown 284.3
1954 Female, age 42, unknown 282.4
2503 Female, age 72, unknown 276.3
2588 Male, age 74, left hemisphere 267.6
2725 Female, age 75, unknown 232.4
2584 Male, age 75, left hemisphere 230.1
Substantia nigra
nTPM: 234.7
2583 Male, age 75, right hemisphere 251.2
1851 Male, age 51, unknown 250.9
2699 Male, age 18, unknown 247.1
2409 Female, age 72, unknown 245.8
2590 Female, age 75, unknown 240.2
1889 Female, age 72, unknown 235.9
2665 Male, age 74, both hemispheres 224.2
2241 Male, age 72, unknown 221.0
1916 Female, age 42, unknown 217.1
1941 Male, age 53, unknown 213.8
Superior colliculus
nTPM: 250.6
1995 Male, age 72, unknown 306.7
1913 Female, age 42, unknown 288.3
1895 Male, age 76, right hemisphere 273.1
1839 Male, age 51, unknown 258.1
2668 Female, age 75, unknown 248.3
2587 Male, age 74, left hemisphere 246.2
1796 Male, age 53, unknown 240.6
2664 Male, age 75, both hemispheres 221.4
2087 Female, age 72, unknown 211.5
2261 Male, age 18, unknown 211.3
Ventral tegmental area
nTPM: 245.2
2223 Female, age 72, unknown 279.6
2410 Female, age 72, unknown 269.0
1915 Female, age 42, unknown 236.9
1942 Male, age 51, unknown 231.6
2218 Male, age 76, both hemispheres 228.6
2021 Male, age 53, unknown 225.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 214.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 214.3
Samples: 139

Max nTPM: 735.2
Min nTPM: 72.9
Std nTPM: 121.7
Median nTPM: 181.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 735.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 718.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 599.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 589.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 578.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 514.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 447.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 432.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 407.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 403.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 402.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 523.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 523.3
FF:10158-103A5 76 years, female 523.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 119.1
Pig sample Sample description nTPM
Midbrain
nTPM: 119.1
Samples: 4

Max nTPM: 306.2
Min nTPM: 39.3
Sample A Female 306.2
Sample B Female 87.5
Sample C Male 39.3
Sample D Male 43.2
Periaqueductal gray
nTPM: 54.0
Samples: 3

Max nTPM: 68.7
Min nTPM: 35.7
Sample B Female 57.5
Sample C Male 35.7
Sample D Male 68.7
Substantia nigra
nTPM: 106.0
Samples: 4

Max nTPM: 180.7
Min nTPM: 71.1
Sample A Female 95.3
Sample B Female 71.1
Sample C Male 77.0
Sample D Male 180.7
Superior colliculi
nTPM: 74.0
Samples: 4

Max nTPM: 102.3
Min nTPM: 37.7
Sample A Female 75.7
Sample B Female 37.7
Sample C Male 80.4
Sample D Male 102.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 582.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 582.8
Samples: 4

Max nTPM: 688.9
Min nTPM: 499.3
Sample A Male 503.5
Sample B Male 499.3
Sample C Female 688.9
Sample D Female 639.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.7
386243 Antisense, RP_040804_01_D04, Mouse strain C57BL/6J (56 days, male) 14.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.