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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.9 nTPM
HPA:72.9 nTPM
GTEx:106.6 nTPM
FANTOM5:112.7 Scaled Tags Per Million
Mouse:83.3 nTPM
Allen mouse:12.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.9
2019 Male, age 18, unknown 82.6
2219 Male, age 76, both hemispheres 68.9
2411 Female, age 72, unknown 65.6
1827 Male, age 72, unknown 63.1
1870 Female, age 42, unknown 61.3
2586 Male, age 75, left hemisphere 59.8
1833 Male, age 53, unknown 58.1
2828 Female, age 72, unknown 57.0
2666 Male, age 74, left hemisphere 56.8
1830 Male, age 51, unknown 56.0
Dorsal raphe nucleus
nTPM: 60.4
1828 Male, age 53, unknown 65.6
2298 Female, age 72, unknown 64.4
2750 Male, age 76, both hemispheres 59.7
2047 Male, age 72, unknown 56.2
2016 Female, age 72, unknown 56.0
Inferior colliculus
nTPM: 68.7
2097 Female, age 72, unknown 74.0
1890 Male, age 53, unknown 73.3
1848 Female, age 42, unknown 67.7
2849 Male, age 72, unknown 59.7
Median raphe nucleus
nTPM: 68.7
2220 Male, age 76, midline 68.7
Pedunculopontine tegmental nucleus
nTPM: 67.3
1921 Female, age 85, both hemispheres 71.9
2334 Male, age 80, both hemispheres 69.0
2338 Male, age 61, both hemispheres 60.9
Periaquaductal grey, anterior
nTPM: 62.3
2502 Female, age 75, unknown 64.1
1947 Male, age 18, unknown 62.6
1795 Male, age 51, unknown 60.2
Periaquaductal grey, dorsal
nTPM: 59.5
1831 Male, age 72, unknown 61.0
2464 Female, age 72, unknown 59.9
2850 Male, age 76, both hemispheres 59.5
1840 Male, age 53, unknown 57.8
Periaquaductal grey, lateral
nTPM: 58.1
2272 Male, age 74, both hemispheres 63.5
2140 Male, age 76, both hemispheres 55.5
2053 Male, age 18, unknown 55.3
Pretectal area
nTPM: 72.9
1817 Female, age 42, unknown 90.6
1944 Female, age 72, unknown 89.4
1816 Male, age 51, unknown 89.3
2007 Male, age 72, unknown 85.4
1815 Male, age 53, unknown 75.5
2667 Female, age 75, unknown 74.4
2224 Female, age 72, unknown 65.0
2273 Male, age 74, both hemispheres 64.6
2407 Male, age 75, both hemispheres 58.5
2316 Male, age 76, right hemisphere 54.4
2825 Male, age 18, unknown 54.2
Red nucleus
nTPM: 64.9
2785 Male, age 18, unknown 76.9
1821 Female, age 72, unknown 72.3
2725 Female, age 75, unknown 69.3
1865 Male, age 51, unknown 68.0
2503 Female, age 72, unknown 64.8
1904 Male, age 53, unknown 64.5
1954 Female, age 42, unknown 63.9
2227 Male, age 72, unknown 63.0
2769 Male, age 72, unknown 62.7
2823 Male, age 76, right hemisphere 58.4
2584 Male, age 75, left hemisphere 58.0
2588 Male, age 74, left hemisphere 57.0
Substantia nigra
nTPM: 68.3
1889 Female, age 72, unknown 82.1
2241 Male, age 72, unknown 79.3
1916 Female, age 42, unknown 73.2
2409 Female, age 72, unknown 71.5
1851 Male, age 51, unknown 68.6
1941 Male, age 53, unknown 66.8
2665 Male, age 74, both hemispheres 65.4
2583 Male, age 75, right hemisphere 60.7
2699 Male, age 18, unknown 58.9
2590 Female, age 75, unknown 56.8
Superior colliculus
nTPM: 63.7
2087 Female, age 72, unknown 76.8
1895 Male, age 76, right hemisphere 66.4
2587 Male, age 74, left hemisphere 66.0
1796 Male, age 53, unknown 65.4
2261 Male, age 18, unknown 65.2
2668 Female, age 75, unknown 65.2
1913 Female, age 42, unknown 62.4
1839 Male, age 51, unknown 58.3
1995 Male, age 72, unknown 58.0
2664 Male, age 75, both hemispheres 53.7
Ventral tegmental area
nTPM: 62.9
2410 Female, age 72, unknown 69.6
1915 Female, age 42, unknown 67.7
2218 Male, age 76, both hemispheres 63.2
2223 Female, age 72, unknown 61.3
1942 Male, age 51, unknown 60.4
2021 Male, age 53, unknown 55.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 106.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 106.6
Samples: 139

Max nTPM: 320.1
Min nTPM: 50.0
Std nTPM: 36.9
Median nTPM: 98.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 320.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 207.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 197.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 190.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 186.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 186.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 183.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 169.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 167.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 163.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 159.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.7
FF:10158-103A5 76 years, female 112.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 83.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.3
Samples: 4

Max nTPM: 86.7
Min nTPM: 81.6
Sample A Male 82.2
Sample B Male 82.7
Sample C Female 81.6
Sample D Female 86.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
68546299 Antisense, RP_050120_02_C10, Mouse strain C57BL/6J (56 days, male) 12.0

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