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CHCHD1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:39.1 nTPM
HPA:39.1 nTPM
GTEx:34.4 nTPM
FANTOM5:40.5 Scaled Tags Per Million
Pig:10.0 nTPM
Mouse:98.4 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039046
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.0
2481 Female, age 94, left hemisphere 41.3
2290 Female, age 72, unknown 39.4
1854 Male, age 80, left hemisphere 39.2
1857 Female, age 85, left hemisphere 39.0
2846 Female, age 79, unknown 38.6
1781 Male, age 74, unknown 38.3
2288 Male, age 75, left hemisphere 38.3
2289 Male, age 61, right hemisphere 37.6
Claustrum
nTPM: 38.4
1956 Male, age 74, unknown 39.5
2198 Male, age 80, both hemispheres 38.9
2491 Male, age 75, both hemispheres 38.9
2196 Female, age 79, unknown 38.8
2392 Female, age 94, both hemispheres 38.8
2292 Female, age 85, both hemispheres 37.7
2284 Female, age 91, both hemispheres 37.6
2568 Male, age 61, both hemispheres 37.6
2645 Female, age 72, unknown 37.5
Globus pallidus, externus
nTPM: 38.5
2772 Female, age 79, unknown 39.7
2395 Male, age 75, both hemispheres 39.4
2646 Male, age 61, right hemisphere 38.2
1996 Male, age 80, right hemisphere 38.0
2567 Female, age 72, unknown 37.2
Globus pallidus, internus
nTPM: 38.2
2483 Female, age 94, right hemisphere 39.6
2287 Male, age 75, right hemisphere 39.4
2778 Female, age 91, both hemispheres 39.2
1818 Male, age 74, unknown 37.9
2037 Male, age 80, right hemisphere 37.8
2111 Female, age 85, right hemisphere 37.3
2566 Female, age 72, unknown 36.2
Nucleus accumbens
nTPM: 38.7
2286 Male, age 75, left hemisphere 39.6
1856 Female, age 91, right hemisphere 39.1
1783 Male, age 74, unknown 39.0
2391 Female, age 94, left hemisphere 38.9
2824 Male, age 61, right hemisphere 38.9
2698 Female, age 72, unknown 38.2
1806 Female, age 85, left hemisphere 38.1
2732 Male, age 80, right hemisphere 37.9
Nucleus basalis of Meynert
nTPM: 38.3
2484 Female, age 94, left hemisphere 38.9
2393 Male, age 80, right hemisphere 38.6
2821 Male, age 75, both hemispheres 38.5
2569 Male, age 61, both hemispheres 37.3
Nucleus of the diagonal band
nTPM: 39.1
2775 Male, age 80, right hemisphere 40.2
1812 Female, age 91, both hemispheres 39.5
2195 Female, age 85, both hemispheres 39.0
2029 Male, age 61, right hemisphere 38.6
1979 Male, age 74, unknown 38.3
Olfactory tubercle
nTPM: 38.5
1846 Male, age 80, right hemisphere 38.9
1998 Female, age 91, both hemispheres 38.7
2856 Male, age 75, right hemisphere 38.3
2487 Female, age 94, left hemisphere 38.2
Putamen
nTPM: 38.8
2466 Female, age 79, unknown 39.6
2482 Female, age 94, left hemisphere 39.6
1937 Female, age 91, right hemisphere 39.1
1829 Male, age 74, unknown 38.5
2647 Male, age 75, left hemisphere 38.5
2489 Female, age 72, unknown 38.1
1838 Male, age 80, right hemisphere 38.0
Septal nuclei
nTPM: 38.3
1960 Male, age 74, unknown 39.6
2031 Female, age 72, unknown 39.6
2199 Male, age 80, right hemisphere 38.2
2059 Female, age 85, both hemispheres 38.1
2629 Female, age 94, right hemisphere 38.1
2009 Female, age 91, both hemispheres 38.0
2394 Male, age 61, left hemisphere 36.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 34.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.4
Samples: 246

Max nTPM: 64.3
Min nTPM: 17.7
Std nTPM: 7.3
Median nTPM: 31.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 64.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 59.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 59.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 53.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 52.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 51.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 51.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 50.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 49.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 49.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 49.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.4
Samples: 246

Max nTPM: 88.0
Min nTPM: 18.8
Std nTPM: 8.0
Median nTPM: 32.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 88.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 67.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 62.4
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 61.8
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 54.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 54.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 53.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 53.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 52.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 52.3
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 51.8
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Brain - Putamen (basal ganglia)
Average nTPM: 33.9
Samples: 205

Max nTPM: 65.4
Min nTPM: 20.6
Std nTPM: 7.0
Median nTPM: 32.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 65.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 62.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 52.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 50.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 49.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 49.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 49.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 48.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 47.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 47.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 47.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 36.4
FF:10164-103B2 76 years, female 36.4
Globus pallidus
Scaled Tags Per Million: 40.5
FF:10175-103C4 60 years, female 52.0
FF:10161-103A8 76 years, female 29.0
Nucleus accumbens
Scaled Tags Per Million: 26.9
FF:10037-101F1 23-56 years, mixed 26.9
Putamen
Scaled Tags Per Million: 36.0
FF:10176-103C5 60 years, female 36.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.0
Pig sample Sample description nTPM
Caudate
nTPM: 9.9
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.8
Sample A Female 9.6
Sample B Female 8.8
Sample C Male 10.8
Sample D Male 10.3
Putamen
nTPM: 10.0
Samples: 4

Max nTPM: 12.4
Min nTPM: 9.0
Sample A Female 9.2
Sample B Female 9.4
Sample C Male 12.4
Sample D Male 9.0
Septum
nTPM: 9.4
Samples: 4

Max nTPM: 10.6
Min nTPM: 8.7
Sample A Female 10.6
Sample B Female 8.9
Sample C Male 9.4
Sample D Male 8.7
Ventral pallidum
nTPM: 8.9
Samples: 4

Max nTPM: 10.3
Min nTPM: 7.5
Sample A Female 10.3
Sample B Female 8.5
Sample C Male 7.5
Sample D Male 9.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 98.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 95.3
Samples: 4

Max nTPM: 103.3
Min nTPM: 85.6
Sample A Male 96.5
Sample B Male 85.6
Sample C Female 95.9
Sample D Female 103.3
Septum
nTPM: 98.5
Samples: 4

Max nTPM: 112.1
Min nTPM: 78.8
Sample A Male 78.8
Sample B Male 109.4
Sample C Female 112.1
Sample D Female 93.5
Ventral forebrain
nTPM: 94.4
Samples: 4

Max nTPM: 114.2
Min nTPM: 82.6
Sample A Male 82.6
Sample B Male 88.5
Sample C Female 114.2
Sample D Female 92.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68862162 Antisense, RP_050301_01_F07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
68862162 Antisense, RP_050301_01_F07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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