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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.5 nTPM
HPA:71.5 nTPM
GTEx:87.4 nTPM
FANTOM5:145.0 Scaled Tags Per Million
Pig:153.1 nTPM
Mouse:149.8 nTPM
Allen mouse:9.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.8
2411 Female, age 72, unknown 74.0
1870 Female, age 42, unknown 73.2
1827 Male, age 72, unknown 73.1
2586 Male, age 75, left hemisphere 71.2
2666 Male, age 74, left hemisphere 70.5
1833 Male, age 53, unknown 67.3
1830 Male, age 51, unknown 66.6
2019 Male, age 18, unknown 66.2
2828 Female, age 72, unknown 58.4
2219 Male, age 76, both hemispheres 57.5
Dorsal raphe nucleus
nTPM: 64.2
2047 Male, age 72, unknown 67.9
2750 Male, age 76, both hemispheres 66.6
2298 Female, age 72, unknown 65.3
1828 Male, age 53, unknown 62.4
2016 Female, age 72, unknown 58.9
Inferior colliculus
nTPM: 69.5
2097 Female, age 72, unknown 73.0
1848 Female, age 42, unknown 71.8
2849 Male, age 72, unknown 70.6
1890 Male, age 53, unknown 62.6
Median raphe nucleus
nTPM: 66.2
2220 Male, age 76, midline 66.2
Pedunculopontine tegmental nucleus
nTPM: 65.2
2334 Male, age 80, both hemispheres 69.5
1921 Female, age 85, both hemispheres 67.0
2338 Male, age 61, both hemispheres 59.0
Periaquaductal grey, anterior
nTPM: 71.5
1947 Male, age 18, unknown 78.2
2502 Female, age 75, unknown 70.3
1795 Male, age 51, unknown 66.1
Periaquaductal grey, dorsal
nTPM: 63.6
1840 Male, age 53, unknown 73.9
2464 Female, age 72, unknown 63.9
1831 Male, age 72, unknown 59.6
2850 Male, age 76, both hemispheres 57.1
Periaquaductal grey, lateral
nTPM: 58.5
2053 Male, age 18, unknown 64.7
2272 Male, age 74, both hemispheres 56.2
2140 Male, age 76, both hemispheres 54.7
Pretectal area
nTPM: 67.9
1816 Male, age 51, unknown 78.6
2007 Male, age 72, unknown 76.5
1817 Female, age 42, unknown 74.8
1944 Female, age 72, unknown 70.9
1815 Male, age 53, unknown 69.7
2407 Male, age 75, both hemispheres 68.4
2224 Female, age 72, unknown 66.7
2825 Male, age 18, unknown 66.6
2316 Male, age 76, right hemisphere 60.1
2667 Female, age 75, unknown 59.4
2273 Male, age 74, both hemispheres 55.2
Red nucleus
nTPM: 62.9
2584 Male, age 75, left hemisphere 77.3
2588 Male, age 74, left hemisphere 70.0
1821 Female, age 72, unknown 67.8
2725 Female, age 75, unknown 65.7
2785 Male, age 18, unknown 63.8
2503 Female, age 72, unknown 63.2
1954 Female, age 42, unknown 59.2
2769 Male, age 72, unknown 59.2
2227 Male, age 72, unknown 58.8
1865 Male, age 51, unknown 57.1
2823 Male, age 76, right hemisphere 56.1
1904 Male, age 53, unknown 56.0
Substantia nigra
nTPM: 66.5
1941 Male, age 53, unknown 73.7
1889 Female, age 72, unknown 72.1
2583 Male, age 75, right hemisphere 71.6
2590 Female, age 75, unknown 71.0
2241 Male, age 72, unknown 70.0
2665 Male, age 74, both hemispheres 65.8
1851 Male, age 51, unknown 64.5
2409 Female, age 72, unknown 61.6
1916 Female, age 42, unknown 61.5
2699 Male, age 18, unknown 53.6
Superior colliculus
nTPM: 66.8
1839 Male, age 51, unknown 70.9
1895 Male, age 76, right hemisphere 70.3
2664 Male, age 75, both hemispheres 69.9
2261 Male, age 18, unknown 68.8
2587 Male, age 74, left hemisphere 68.4
2668 Female, age 75, unknown 67.9
1796 Male, age 53, unknown 67.6
2087 Female, age 72, unknown 65.1
1913 Female, age 42, unknown 61.6
1995 Male, age 72, unknown 57.3
Ventral tegmental area
nTPM: 64.7
2223 Female, age 72, unknown 73.1
2410 Female, age 72, unknown 68.2
1942 Male, age 51, unknown 64.1
1915 Female, age 42, unknown 63.4
2021 Male, age 53, unknown 60.6
2218 Male, age 76, both hemispheres 58.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.4
Samples: 139

Max nTPM: 182.6
Min nTPM: 49.8
Std nTPM: 19.9
Median nTPM: 84.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 182.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 145.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 141.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 135.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 132.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 126.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 118.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 116.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 115.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 115.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 114.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 145.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 145.0
FF:10158-103A5 76 years, female 145.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 153.1
Pig sample Sample description nTPM
Midbrain
nTPM: 144.6
Samples: 4

Max nTPM: 157.7
Min nTPM: 134.3
Sample A Female 134.3
Sample B Female 139.3
Sample C Male 146.9
Sample D Male 157.7
Periaqueductal gray
nTPM: 129.5
Samples: 3

Max nTPM: 149.5
Min nTPM: 115.6
Sample B Female 123.4
Sample C Male 149.5
Sample D Male 115.6
Substantia nigra
nTPM: 125.8
Samples: 4

Max nTPM: 171.1
Min nTPM: 79.0
Sample A Female 171.1
Sample B Female 117.1
Sample C Male 135.8
Sample D Male 79.0
Superior colliculi
nTPM: 153.1
Samples: 4

Max nTPM: 194.2
Min nTPM: 132.2
Sample A Female 194.2
Sample B Female 132.2
Sample C Male 152.9
Sample D Male 133.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 149.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 149.8
Samples: 4

Max nTPM: 155.2
Min nTPM: 145.6
Sample A Male 145.6
Sample B Male 155.2
Sample C Female 150.1
Sample D Female 148.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
74819230 Antisense, RP_060315_02_B06, Mouse strain C57BL/6J (56 days, male) 16.8
68076535 Antisense, RP_040923_02_E06, Mouse strain C57BL/6J (56 days, male) 12.6
70918814 Antisense, RP_050712_04_E10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.