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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:91.7 nTPM
HPA:91.7 nTPM
GTEx:96.5 nTPM
FANTOM5:158.0 Scaled Tags Per Million
Pig:186.5 nTPM
Mouse:155.1 nTPM
Allen mouse:13.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA011562Antibody CAB005585
Glial cells Not detectedMedium
Neuronal cells HighHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 91.7
Sample id Sample description nTPM
Hippocampus
nTPM: 64.1
1898 Male, age 80, left hemisphere 84.4
1855 Male, age 76, left hemisphere 63.7
2621 Female, age 67, right hemisphere 63.1
1911 Female, age 85, right hemisphere 60.2
2529 Female, age 94, left hemisphere 56.5
2148 Female, age 91, left hemisphere 56.3
Dentate gyrus
nTPM: 68.7
1927 Female, age 91, both hemispheres 79.4
2530 Female, age 94, left hemisphere 70.3
2010 Male, age 76, both hemispheres 69.5
2246 Female, age 85, both hemispheres 68.5
2531 Female, age 67, both hemispheres 64.0
2528 Male, age 74, both hemispheres 60.5
Entorhinal gyrus
nTPM: 73.6
1938 Female, age 85, left hemisphere 84.9
2764 Male, age 80, right hemisphere 81.6
1787 Male, age 76, left hemisphere 74.8
2613 Female, age 94, left hemisphere 74.1
2686 Male, age 75, right hemisphere 66.0
2117 Female, age 91, right hemisphere 60.4
Hippocampus, CA1
nTPM: 77.2
2749 Male, age 80, left hemisphere 112.4
1873 Female, age 85, both hemispheres 73.8
2045 Male, age 76, both hemispheres 72.4
2527 Male, age 74, both hemispheres 64.1
2082 Female, age 91, right hemisphere 63.5
Hippocampus, CA2
nTPM: 69.0
1892 Male, age 76, both hemispheres 84.5
1963 Male, age 80, left hemisphere 78.1
1940 Female, age 85, left hemisphere 66.5
2249 Male, age 74, both hemispheres 63.5
2437 Female, age 94, left hemisphere 61.0
2113 Female, age 91, right hemisphere 60.4
Hippocampus, CA3
nTPM: 71.5
2137 Male, age 80, left hemisphere 104.1
1867 Male, age 76, both hemispheres 75.8
1891 Female, age 85, both hemispheres 67.0
2436 Male, age 74, both hemispheres 64.9
2620 Female, age 94, left hemisphere 61.5
2861 Female, age 67, both hemispheres 56.0
Parahippocampal cortex
nTPM: 72.7
1850 Male, age 80, both hemispheres 100.8
1990 Female, age 91, right hemisphere 79.2
1933 Female, age 85, both hemispheres 77.7
2532 Female, age 72, left hemisphere 76.3
2693 Female, age 94, both hemispheres 75.9
2245 Female, age 91, both hemispheres 69.5
2250 Female, age 67, right hemisphere 66.6
2018 Male, age 76, both hemispheres 64.9
2692 Male, age 74, both hemispheres 60.2
2622 Female, age 67, right hemisphere 55.8
Perirhinal gyrus
nTPM: 91.7
1794 Male, age 80, right hemisphere 99.4
1847 Female, age 91, left hemisphere 95.3
1841 Female, age 85, right hemisphere 95.0
2848 Male, age 76, right hemisphere 87.4
2521 Female, age 94, right hemisphere 81.6
Subiculum
nTPM: 65.6
1901 Male, age 80, both hemispheres 80.0
1977 Female, age 85, both hemispheres 79.4
2042 Male, age 76, both hemispheres 63.0
2438 Female, age 94, left hemisphere 62.1
2619 Male, age 74, both hemispheres 54.4
2729 Female, age 91, right hemisphere 54.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 96.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 96.5
Samples: 197

Max nTPM: 202.9
Min nTPM: 35.0
Std nTPM: 26.5
Median nTPM: 92.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 202.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 162.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 157.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 156.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 156.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 153.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 148.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 146.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 143.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 142.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 141.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 158.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 158.0
FF:10169-103B7 60 years, female 205.0
FF:10153-102I9 76 years, female 110.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 186.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 186.5
Samples: 4

Max nTPM: 223.7
Min nTPM: 154.9
Sample A Female 223.7
Sample B Female 204.5
Sample C Male 154.9
Sample D Male 162.9
Entorhinal cortex
nTPM: 153.2
Samples: 4

Max nTPM: 184.4
Min nTPM: 111.9
Sample A Female 152.0
Sample B Female 184.4
Sample C Male 164.5
Sample D Male 111.9
Subiculum
nTPM: 147.7
Samples: 4

Max nTPM: 192.6
Min nTPM: 114.6
Sample A Female 192.6
Sample B Female 142.5
Sample C Male 141.2
Sample D Male 114.6
Ventral hippocampus
nTPM: 166.3
Samples: 4

Max nTPM: 180.7
Min nTPM: 139.8
Sample A Female 172.5
Sample B Female 139.8
Sample C Male 172.2
Sample D Male 180.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 155.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 155.2
Samples: 4

Max nTPM: 166.7
Min nTPM: 148.3
Sample A Male 148.3
Sample B Male 152.0
Sample C Female 153.6
Sample D Female 166.7
Hippocampal formation
nTPM: 154.1
Samples: 4

Max nTPM: 168.9
Min nTPM: 135.1
Sample A Male 168.9
Sample B Male 157.0
Sample C Female 155.2
Sample D Female 135.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.0
68076535 Antisense, RP_040923_02_E06, Mouse strain C57BL/6J (56 days, male) 19.7
74819230 Antisense, RP_060315_02_B06, Mouse strain C57BL/6J (56 days, male) 19.3
70918814 Antisense, RP_050712_04_E10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.