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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.1 nTPM
HPA:82.1 nTPM
GTEx:62.1 nTPM
FANTOM5:81.7 Scaled Tags Per Million
Pig:54.8 nTPM
Mouse:55.5 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.2
1827 Male, age 72, unknown 82.2
2219 Male, age 76, both hemispheres 80.3
2666 Male, age 74, left hemisphere 79.4
1870 Female, age 42, unknown 79.2
2411 Female, age 72, unknown 79.2
1830 Male, age 51, unknown 78.4
1833 Male, age 53, unknown 78.4
2828 Female, age 72, unknown 78.3
2019 Male, age 18, unknown 74.2
2586 Male, age 75, left hemisphere 72.9
Dorsal raphe nucleus
nTPM: 79.9
2298 Female, age 72, unknown 85.3
2047 Male, age 72, unknown 84.3
2750 Male, age 76, both hemispheres 78.7
2016 Female, age 72, unknown 75.9
1828 Male, age 53, unknown 75.2
Inferior colliculus
nTPM: 80.0
1848 Female, age 42, unknown 82.6
2097 Female, age 72, unknown 80.1
2849 Male, age 72, unknown 79.9
1890 Male, age 53, unknown 77.4
Median raphe nucleus
nTPM: 82.1
2220 Male, age 76, midline 82.1
Pedunculopontine tegmental nucleus
nTPM: 78.8
2334 Male, age 80, both hemispheres 82.7
1921 Female, age 85, both hemispheres 79.7
2338 Male, age 61, both hemispheres 74.1
Periaquaductal grey, anterior
nTPM: 79.7
1947 Male, age 18, unknown 83.6
2502 Female, age 75, unknown 79.6
1795 Male, age 51, unknown 75.9
Periaquaductal grey, dorsal
nTPM: 78.7
1840 Male, age 53, unknown 80.9
2850 Male, age 76, both hemispheres 80.1
2464 Female, age 72, unknown 77.2
1831 Male, age 72, unknown 76.7
Periaquaductal grey, lateral
nTPM: 80.6
2272 Male, age 74, both hemispheres 81.3
2140 Male, age 76, both hemispheres 80.3
2053 Male, age 18, unknown 80.1
Pretectal area
nTPM: 80.5
1816 Male, age 51, unknown 86.5
2273 Male, age 74, both hemispheres 82.5
2407 Male, age 75, both hemispheres 81.7
1815 Male, age 53, unknown 81.0
1944 Female, age 72, unknown 80.9
2007 Male, age 72, unknown 80.8
2825 Male, age 18, unknown 79.9
2316 Male, age 76, right hemisphere 79.5
1817 Female, age 42, unknown 77.5
2224 Female, age 72, unknown 77.5
2667 Female, age 75, unknown 77.5
Red nucleus
nTPM: 77.2
1954 Female, age 42, unknown 79.9
1865 Male, age 51, unknown 79.2
1904 Male, age 53, unknown 79.1
2227 Male, age 72, unknown 77.8
2725 Female, age 75, unknown 77.5
2769 Male, age 72, unknown 77.4
2785 Male, age 18, unknown 77.3
2823 Male, age 76, right hemisphere 77.0
2503 Female, age 72, unknown 76.8
1821 Female, age 72, unknown 76.5
2588 Male, age 74, left hemisphere 74.4
2584 Male, age 75, left hemisphere 73.1
Substantia nigra
nTPM: 79.8
1916 Female, age 42, unknown 83.7
1889 Female, age 72, unknown 83.1
2665 Male, age 74, both hemispheres 82.9
2590 Female, age 75, unknown 81.0
1941 Male, age 53, unknown 80.9
1851 Male, age 51, unknown 79.5
2409 Female, age 72, unknown 78.6
2699 Male, age 18, unknown 78.2
2583 Male, age 75, right hemisphere 76.6
2241 Male, age 72, unknown 73.4
Superior colliculus
nTPM: 79.5
1895 Male, age 76, right hemisphere 83.3
2261 Male, age 18, unknown 82.3
1796 Male, age 53, unknown 82.2
2668 Female, age 75, unknown 80.7
2087 Female, age 72, unknown 78.9
1839 Male, age 51, unknown 78.7
1995 Male, age 72, unknown 78.7
2587 Male, age 74, left hemisphere 78.0
1913 Female, age 42, unknown 77.1
2664 Male, age 75, both hemispheres 75.5
Ventral tegmental area
nTPM: 78.8
2410 Female, age 72, unknown 83.1
2223 Female, age 72, unknown 79.7
2218 Male, age 76, both hemispheres 79.0
1915 Female, age 42, unknown 78.1
2021 Male, age 53, unknown 77.2
1942 Male, age 51, unknown 75.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.1
Samples: 139

Max nTPM: 125.3
Min nTPM: 36.9
Std nTPM: 13.9
Median nTPM: 61.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 125.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 114.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 106.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 98.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 94.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 92.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 86.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 84.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 78.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 77.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 77.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 81.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 81.7
FF:10158-103A5 76 years, female 81.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.8
Pig sample Sample description nTPM
Midbrain
nTPM: 51.0
Samples: 4

Max nTPM: 60.3
Min nTPM: 39.7
Sample A Female 60.3
Sample B Female 39.7
Sample C Male 58.7
Sample D Male 45.4
Periaqueductal gray
nTPM: 42.4
Samples: 3

Max nTPM: 47.8
Min nTPM: 38.2
Sample B Female 41.3
Sample C Male 47.8
Sample D Male 38.2
Substantia nigra
nTPM: 47.4
Samples: 4

Max nTPM: 52.8
Min nTPM: 41.4
Sample A Female 52.8
Sample B Female 46.0
Sample C Male 49.2
Sample D Male 41.4
Superior colliculi
nTPM: 54.8
Samples: 4

Max nTPM: 57.3
Min nTPM: 51.0
Sample A Female 56.3
Sample B Female 57.3
Sample C Male 54.6
Sample D Male 51.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.5
Samples: 4

Max nTPM: 59.3
Min nTPM: 48.4
Sample A Male 48.4
Sample B Male 59.3
Sample C Female 58.6
Sample D Female 55.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
68667270 Antisense, RP_050201_01_H11, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.