Single cell type - ADCY6 - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	ADCY6
Gene descriptionⁱ Full gene name according to HGNC.	Adenylate cyclase 6
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Disease related genes Enzymes Human disease related genes Metabolic proteins Potential drug targets
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular,Membrane
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	4

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type expression clusterⁱ The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Intestinal epithelial cells - Unknown function (mainly)
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Distal enterocytes)
Immune cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Not detected in immune cells
Immune cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Not detected
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Cell line enhanced (SK-BR-3)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (nTPM) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Distal enterocytes)

SINGLE CELL TISSUES OVERVIEWⁱ An overview of all tissues where single cell type expression has been analyzed. Each tissue name and corresponding UMAP plot is clickable and redirects to the selected tissue.
Adipose tissue Bone marrow Brain Breast Bronchus Colon Endometrium Esophagus Eye Heart muscle Kidney Liver Lung Lymph node Ovary Pancreas Placenta Prostate Rectum Skeletal muscle Skin Small intestine Spleen Stomach Testis

EXPRESSION CLUSTERING & CORRELATIONⁱ

ADCY6 is part of cluster 53 Intestinal epithelial cells - Unknown function with confidenceⁱ 1
611 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on single cell type RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
VIPR1	Vasoactive intestinal peptide receptor 1	0.6882	53
TMEM74B	Transmembrane protein 74B	0.5818	48
ARHGEF17	Rho guanine nucleotide exchange factor 17	0.5558	48
PIGR	Polymeric immunoglobulin receptor	0.5540	53
RASD2	RASD family member 2	0.5486	27
SH2B1	SH2B adaptor protein 1	0.5412	53
ZNF768	Zinc finger protein 768	0.5337	53
B3GALT5	Beta-1,3-galactosyltransferase 5	0.5256	53
TRIM3	Tripartite motif containing 3	0.5199	45
PARM1	Prostate androgen-regulated mucin-like protein 1	0.5177	53
DGCR2	DiGeorge syndrome critical region gene 2	0.5101	53
FAT1	FAT atypical cadherin 1	0.5043	40
LGALS4	Galectin 4	0.5032	53
CLDN8	Claudin 8	0.5030	53
ADRA1D	Adrenoceptor alpha 1D	0.5016	48

SINGLE CELL TISSUESⁱ Single cell RNA levels of annotated cell type clusters are shown separately for each analyzed tissue. For easier navigation across tissues, use the above Single cell tissue overview, where each tissue name and UMAP plot is clickable and redirects to the selected tissue, alternatively the grey browser on the left side of the window. Barchart shows nTPM levels in each annotated cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Adipose tissue
Cluster Expression Alphabetical Bone marrow
Cluster Expression Alphabetical Brain
Cluster Expression Alphabetical Breast
Cluster Expression Alphabetical Bronchus
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Endometrium
Cluster Expression Alphabetical Esophagus
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Lymph node
Cluster Expression Alphabetical Ovary
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skeletal muscle
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Spleen
Cluster Expression Alphabetical Stomach
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ

Organ

Expression

Alphabetical

Adipocytes	11.6 nTPM
Breast	16.7 nTPM
Adipose tissue	6.5 nTPM

Alveolar cells type 1	0.0 nTPM
Lung	0.0 nTPM

Alveolar cells type 2	6.4 nTPM
Lung	6.4 nTPM

Astrocytes	18.3 nTPM
Brain	18.3 nTPM

B-cells	0.6 nTPM
Breast	2.6 nTPM
Colon	1.6 nTPM
Liver	1.3 nTPM
Kidney	0.0 nTPM
PBMC	0.0 nTPM
Adipose tissue	0.0 nTPM
Lymph node	0.0 nTPM
Bone marrow	0.0 nTPM
Spleen	0.0 nTPM
Stomach	0.0 nTPM

Dendritic cells	0.4 nTPM
Breast	0.7 nTPM
Adipose tissue	0.3 nTPM
PBMC	0.0 nTPM

Endothelial cells	8.1 nTPM
Eye	13.7 nTPM
Breast	12.1 nTPM
Skeletal muscle	11.4 nTPM
Ovary	10.5 nTPM
Endometrium	10.2 nTPM
Liver	9.2 nTPM
Esophagus	8.8 nTPM
Prostate	8.0 nTPM
Pancreas	7.7 nTPM
Testis	6.5 nTPM
Skin	6.1 nTPM
Placenta	4.6 nTPM
Heart muscle	4.0 nTPM
Lung	0.0 nTPM

Fibroblasts	7.6 nTPM
Stomach	11.9 nTPM
Ovary	11.8 nTPM
Breast	9.5 nTPM
Skeletal muscle	9.2 nTPM
Placenta	9.1 nTPM
Adipose tissue	8.4 nTPM
Skin	7.0 nTPM
Prostate	6.2 nTPM
Esophagus	5.8 nTPM
Heart muscle	3.4 nTPM
Lung	1.2 nTPM

Intestinal goblet cells	24.9 nTPM
Rectum	29.8 nTPM
Small intestine	26.4 nTPM
Colon	18.6 nTPM

Macrophages	0.7 nTPM
Testis	1.7 nTPM
Skeletal muscle	1.7 nTPM
Breast	1.7 nTPM
Endometrium	1.4 nTPM
Prostate	1.2 nTPM
Ovary	1.1 nTPM
Kidney	0.8 nTPM
Adipose tissue	0.6 nTPM
Lung	0.4 nTPM
PBMC	0.0 nTPM
Pancreas	0.0 nTPM
Esophagus	0.0 nTPM
Bone marrow	0.0 nTPM
Spleen	0.0 nTPM
Stomach	0.0 nTPM

Paneth cells	30.3 nTPM
Rectum	37.5 nTPM
Small intestine	33.8 nTPM
Colon	19.7 nTPM

Plasma cells	0.3 nTPM
Adipose tissue	1.3 nTPM
Esophagus	0.0 nTPM
Bone marrow	0.0 nTPM
Spleen	0.0 nTPM
Stomach	0.0 nTPM

Respiratory ciliated cells	5.8 nTPM
Bronchus	10.1 nTPM
Lung	1.5 nTPM

Smooth muscle cells	26.6 nTPM
Adipose tissue	62.0 nTPM
Skeletal muscle	50.3 nTPM
Breast	39.6 nTPM
Endometrium	31.8 nTPM
Skin	26.1 nTPM
Ovary	25.0 nTPM
Esophagus	23.3 nTPM
Prostate	18.7 nTPM
Bronchus	6.6 nTPM
Heart muscle	6.1 nTPM
Pancreas	3.4 nTPM

T-cells	0.8 nTPM
Prostate	4.7 nTPM
Endometrium	2.7 nTPM
Colon	2.4 nTPM
Breast	1.5 nTPM
Skeletal muscle	0.8 nTPM
Skin	0.5 nTPM
Liver	0.4 nTPM
Stomach	0.4 nTPM
Kidney	0.0 nTPM
Lung	0.0 nTPM
PBMC	0.0 nTPM
Ovary	0.0 nTPM
Adipose tissue	0.0 nTPM
Esophagus	0.0 nTPM
Lymph node	0.0 nTPM
Bone marrow	0.0 nTPM
Spleen	0.0 nTPM

Basal prostatic cells	3.3 nTPM
Prostate	3.3 nTPM

Basal respiratory cells	7.5 nTPM
Bronchus	7.5 nTPM

Cholangiocytes	7.2 nTPM
Liver	7.2 nTPM

Collecting duct cells	18.4 nTPM
Kidney	18.4 nTPM

Undifferentiated cells	23.7 nTPM
Rectum	32.6 nTPM
Colon	20.8 nTPM
Small intestine	17.7 nTPM

Adipose tissue

Bone marrow

Brain

Breast

Bronchus

Colon

Endometrium

Esophagus

Eye

Heart muscle

Kidney

Liver

Lung

Lymph node

Ovary

Pancreas

Placenta

Prostate

Rectum

Skeletal muscle

Skin

Small intestine

Spleen

Stomach

Testis

PBMC