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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.3 nTPM
HPA:65.3 nTPM
GTEx:85.1 nTPM
FANTOM5:23.5 Scaled Tags Per Million
Pig:40.3 nTPM
Mouse:91.6 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.8
2586 Male, age 75, left hemisphere 73.1
1870 Female, age 42, unknown 65.7
2666 Male, age 74, left hemisphere 65.4
2828 Female, age 72, unknown 64.7
2411 Female, age 72, unknown 63.7
2019 Male, age 18, unknown 63.3
1830 Male, age 51, unknown 61.9
2219 Male, age 76, both hemispheres 61.3
1833 Male, age 53, unknown 59.5
1827 Male, age 72, unknown 59.0
Dorsal raphe nucleus
nTPM: 65.3
2047 Male, age 72, unknown 73.0
2750 Male, age 76, both hemispheres 68.2
2016 Female, age 72, unknown 62.4
2298 Female, age 72, unknown 61.5
1828 Male, age 53, unknown 61.3
Inferior colliculus
nTPM: 63.1
1890 Male, age 53, unknown 67.8
2097 Female, age 72, unknown 63.9
2849 Male, age 72, unknown 61.2
1848 Female, age 42, unknown 59.5
Median raphe nucleus
nTPM: 65.1
2220 Male, age 76, midline 65.1
Pedunculopontine tegmental nucleus
nTPM: 62.9
1921 Female, age 85, both hemispheres 66.2
2338 Male, age 61, both hemispheres 63.2
2334 Male, age 80, both hemispheres 59.4
Periaquaductal grey, anterior
nTPM: 65.1
1947 Male, age 18, unknown 66.4
1795 Male, age 51, unknown 64.9
2502 Female, age 75, unknown 64.1
Periaquaductal grey, dorsal
nTPM: 59.9
1840 Male, age 53, unknown 65.2
2464 Female, age 72, unknown 59.2
2850 Male, age 76, both hemispheres 59.0
1831 Male, age 72, unknown 56.2
Periaquaductal grey, lateral
nTPM: 61.1
2140 Male, age 76, both hemispheres 63.0
2053 Male, age 18, unknown 60.9
2272 Male, age 74, both hemispheres 59.4
Pretectal area
nTPM: 61.5
2007 Male, age 72, unknown 70.3
2316 Male, age 76, right hemisphere 64.1
1944 Female, age 72, unknown 63.1
2667 Female, age 75, unknown 62.5
2407 Male, age 75, both hemispheres 61.3
1816 Male, age 51, unknown 61.1
2273 Male, age 74, both hemispheres 59.9
2224 Female, age 72, unknown 59.1
2825 Male, age 18, unknown 58.9
1817 Female, age 42, unknown 58.6
1815 Male, age 53, unknown 57.6
Red nucleus
nTPM: 62.6
2769 Male, age 72, unknown 68.4
2227 Male, age 72, unknown 67.0
1904 Male, age 53, unknown 65.7
2588 Male, age 74, left hemisphere 65.4
2785 Male, age 18, unknown 64.5
2503 Female, age 72, unknown 61.3
2584 Male, age 75, left hemisphere 61.3
2725 Female, age 75, unknown 61.0
2823 Male, age 76, right hemisphere 60.3
1954 Female, age 42, unknown 60.2
1821 Female, age 72, unknown 58.3
1865 Male, age 51, unknown 58.3
Substantia nigra
nTPM: 65.0
1916 Female, age 42, unknown 78.3
1941 Male, age 53, unknown 69.8
2665 Male, age 74, both hemispheres 67.4
1851 Male, age 51, unknown 66.9
2583 Male, age 75, right hemisphere 64.6
1889 Female, age 72, unknown 63.5
2590 Female, age 75, unknown 63.0
2699 Male, age 18, unknown 61.4
2409 Female, age 72, unknown 58.3
2241 Male, age 72, unknown 56.7
Superior colliculus
nTPM: 61.4
2664 Male, age 75, both hemispheres 63.9
2261 Male, age 18, unknown 63.4
2587 Male, age 74, left hemisphere 63.4
2668 Female, age 75, unknown 62.8
1913 Female, age 42, unknown 61.7
1839 Male, age 51, unknown 60.2
1796 Male, age 53, unknown 59.6
1995 Male, age 72, unknown 59.6
1895 Male, age 76, right hemisphere 59.5
2087 Female, age 72, unknown 59.5
Ventral tegmental area
nTPM: 64.6
1915 Female, age 42, unknown 71.8
1942 Male, age 51, unknown 70.9
2410 Female, age 72, unknown 63.6
2218 Male, age 76, both hemispheres 61.0
2021 Male, age 53, unknown 60.5
2223 Female, age 72, unknown 60.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.1
Samples: 139

Max nTPM: 168.5
Min nTPM: 32.1
Std nTPM: 24.8
Median nTPM: 81.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 168.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 157.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 151.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 145.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 145.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 138.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 128.3
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 123.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 123.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 122.5
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 121.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.5
FF:10158-103A5 76 years, female 23.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.3
Pig sample Sample description nTPM
Midbrain
nTPM: 40.3
Samples: 4

Max nTPM: 62.4
Min nTPM: 30.7
Sample A Female 62.4
Sample B Female 30.7
Sample C Male 37.3
Sample D Male 30.9
Periaqueductal gray
nTPM: 28.0
Samples: 3

Max nTPM: 30.2
Min nTPM: 26.0
Sample B Female 27.8
Sample C Male 30.2
Sample D Male 26.0
Substantia nigra
nTPM: 34.6
Samples: 4

Max nTPM: 48.7
Min nTPM: 25.0
Sample A Female 48.7
Sample B Female 25.0
Sample C Male 33.7
Sample D Male 31.0
Superior colliculi
nTPM: 38.0
Samples: 4

Max nTPM: 47.8
Min nTPM: 27.1
Sample A Female 47.8
Sample B Female 27.1
Sample C Male 42.0
Sample D Male 34.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 91.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.6
Samples: 4

Max nTPM: 100.3
Min nTPM: 84.2
Sample A Male 100.3
Sample B Male 87.0
Sample C Female 84.2
Sample D Female 94.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
67979018 Antisense, RP_040923_01_H09, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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