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SSNA1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.8 nTPM
HPA:66.8 nTPM
GTEx:54.3 nTPM
FANTOM5:31.9 Scaled Tags Per Million
Pig:36.6 nTPM
Mouse:36.7 nTPM
Allen mouse:4.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.1
2019 Male, age 18, unknown 67.3
1833 Male, age 53, unknown 66.0
1830 Male, age 51, unknown 65.9
1870 Female, age 42, unknown 65.9
2586 Male, age 75, left hemisphere 65.9
1827 Male, age 72, unknown 65.5
2828 Female, age 72, unknown 65.1
2411 Female, age 72, unknown 64.4
2666 Male, age 74, left hemisphere 63.4
2219 Male, age 76, both hemispheres 61.5
Dorsal raphe nucleus
nTPM: 63.3
2298 Female, age 72, unknown 64.1
2016 Female, age 72, unknown 63.5
2047 Male, age 72, unknown 63.2
1828 Male, age 53, unknown 63.1
2750 Male, age 76, both hemispheres 62.7
Inferior colliculus
nTPM: 61.6
1890 Male, age 53, unknown 63.0
2849 Male, age 72, unknown 62.4
1848 Female, age 42, unknown 61.5
2097 Female, age 72, unknown 59.5
Median raphe nucleus
nTPM: 62.7
2220 Male, age 76, midline 62.7
Pedunculopontine tegmental nucleus
nTPM: 64.2
2338 Male, age 61, both hemispheres 65.3
2334 Male, age 80, both hemispheres 63.8
1921 Female, age 85, both hemispheres 63.5
Periaquaductal grey, anterior
nTPM: 63.0
1947 Male, age 18, unknown 64.5
2502 Female, age 75, unknown 62.6
1795 Male, age 51, unknown 61.9
Periaquaductal grey, dorsal
nTPM: 60.9
1831 Male, age 72, unknown 62.2
2464 Female, age 72, unknown 61.6
2850 Male, age 76, both hemispheres 60.6
1840 Male, age 53, unknown 59.2
Periaquaductal grey, lateral
nTPM: 61.6
2053 Male, age 18, unknown 63.2
2272 Male, age 74, both hemispheres 61.7
2140 Male, age 76, both hemispheres 60.0
Pretectal area
nTPM: 63.9
2407 Male, age 75, both hemispheres 67.1
1815 Male, age 53, unknown 66.7
1817 Female, age 42, unknown 65.9
2007 Male, age 72, unknown 64.7
2667 Female, age 75, unknown 63.6
2825 Male, age 18, unknown 63.4
1816 Male, age 51, unknown 62.7
1944 Female, age 72, unknown 62.7
2316 Male, age 76, right hemisphere 62.7
2273 Male, age 74, both hemispheres 62.4
2224 Female, age 72, unknown 61.4
Red nucleus
nTPM: 66.8
1821 Female, age 72, unknown 71.4
1865 Male, age 51, unknown 68.9
1904 Male, age 53, unknown 68.6
2823 Male, age 76, right hemisphere 68.4
2769 Male, age 72, unknown 67.7
1954 Female, age 42, unknown 66.7
2227 Male, age 72, unknown 65.6
2785 Male, age 18, unknown 65.6
2584 Male, age 75, left hemisphere 65.4
2725 Female, age 75, unknown 65.1
2503 Female, age 72, unknown 63.8
2588 Male, age 74, left hemisphere 63.7
Substantia nigra
nTPM: 64.0
1889 Female, age 72, unknown 66.9
2583 Male, age 75, right hemisphere 65.2
2699 Male, age 18, unknown 65.0
2409 Female, age 72, unknown 64.9
2590 Female, age 75, unknown 64.4
1851 Male, age 51, unknown 64.3
1941 Male, age 53, unknown 63.9
2665 Male, age 74, both hemispheres 63.8
1916 Female, age 42, unknown 63.3
2241 Male, age 72, unknown 58.1
Superior colliculus
nTPM: 65.2
2587 Male, age 74, left hemisphere 70.0
1995 Male, age 72, unknown 69.1
1839 Male, age 51, unknown 66.3
2664 Male, age 75, both hemispheres 66.3
2668 Female, age 75, unknown 66.2
1913 Female, age 42, unknown 65.5
1895 Male, age 76, right hemisphere 64.4
1796 Male, age 53, unknown 62.6
2087 Female, age 72, unknown 61.4
2261 Male, age 18, unknown 60.2
Ventral tegmental area
nTPM: 63.0
2410 Female, age 72, unknown 67.5
1915 Female, age 42, unknown 64.3
2223 Female, age 72, unknown 62.4
2218 Male, age 76, both hemispheres 61.5
2021 Male, age 53, unknown 61.2
1942 Male, age 51, unknown 61.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.3
Samples: 139

Max nTPM: 114.8
Min nTPM: 29.7
Std nTPM: 14.9
Median nTPM: 51.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 114.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 114.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 103.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 102.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 99.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 87.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 84.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 79.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 77.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 76.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 76.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.9
FF:10158-103A5 76 years, female 31.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.6
Pig sample Sample description nTPM
Midbrain
nTPM: 33.5
Samples: 4

Max nTPM: 40.5
Min nTPM: 27.5
Sample A Female 40.5
Sample B Female 30.8
Sample C Male 35.2
Sample D Male 27.5
Periaqueductal gray
nTPM: 24.1
Samples: 3

Max nTPM: 29.0
Min nTPM: 19.7
Sample B Female 23.6
Sample C Male 29.0
Sample D Male 19.7
Substantia nigra
nTPM: 33.5
Samples: 4

Max nTPM: 47.7
Min nTPM: 25.8
Sample A Female 47.7
Sample B Female 28.5
Sample C Male 31.9
Sample D Male 25.8
Superior colliculi
nTPM: 36.7
Samples: 4

Max nTPM: 44.8
Min nTPM: 31.1
Sample A Female 44.8
Sample B Female 31.1
Sample C Male 38.8
Sample D Male 31.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.7
Samples: 4

Max nTPM: 39.2
Min nTPM: 30.2
Sample A Male 39.2
Sample B Male 30.2
Sample C Female 38.4
Sample D Female 38.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
69262344 Antisense, RP_050303_02_C02, Mouse strain C57BL/6J (56 days, male) 4.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.