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SSNA1
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.2 nTPM
HPA:64.2 nTPM
GTEx:56.3 nTPM
FANTOM5:25.3 Scaled Tags Per Million
Pig:29.4 nTPM
Mouse:47.7 nTPM
Allen mouse:9.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 64.2
Sample id Sample description nTPM
Hippocampus
nTPM: 63.7
2621 Female, age 67, right hemisphere 67.2
1898 Male, age 80, left hemisphere 65.7
1855 Male, age 76, left hemisphere 64.0
1911 Female, age 85, right hemisphere 61.9
2529 Female, age 94, left hemisphere 61.9
2148 Female, age 91, left hemisphere 61.2
Dentate gyrus
nTPM: 63.0
2530 Female, age 94, left hemisphere 65.9
2010 Male, age 76, both hemispheres 65.8
1927 Female, age 91, both hemispheres 63.4
2246 Female, age 85, both hemispheres 61.3
2528 Male, age 74, both hemispheres 61.1
2531 Female, age 67, both hemispheres 60.4
Entorhinal gyrus
nTPM: 63.4
2613 Female, age 94, left hemisphere 64.6
2686 Male, age 75, right hemisphere 64.1
2764 Male, age 80, right hemisphere 63.5
1938 Female, age 85, left hemisphere 63.2
2117 Female, age 91, right hemisphere 62.4
1787 Male, age 76, left hemisphere 62.3
Hippocampus, CA1
nTPM: 63.8
2045 Male, age 76, both hemispheres 64.8
2082 Female, age 91, right hemisphere 64.3
2749 Male, age 80, left hemisphere 64.2
1873 Female, age 85, both hemispheres 63.8
2527 Male, age 74, both hemispheres 62.0
Hippocampus, CA2
nTPM: 63.9
1892 Male, age 76, both hemispheres 66.8
2437 Female, age 94, left hemisphere 65.8
1963 Male, age 80, left hemisphere 64.1
2113 Female, age 91, right hemisphere 62.9
1940 Female, age 85, left hemisphere 62.6
2249 Male, age 74, both hemispheres 61.3
Hippocampus, CA3
nTPM: 63.7
2620 Female, age 94, left hemisphere 64.9
1867 Male, age 76, both hemispheres 64.6
1891 Female, age 85, both hemispheres 63.8
2436 Male, age 74, both hemispheres 63.8
2137 Male, age 80, left hemisphere 62.9
2861 Female, age 67, both hemispheres 62.4
Parahippocampal cortex
nTPM: 62.9
1850 Male, age 80, both hemispheres 65.3
2532 Female, age 72, left hemisphere 64.7
2693 Female, age 94, both hemispheres 64.5
2018 Male, age 76, both hemispheres 64.0
2692 Male, age 74, both hemispheres 63.3
1933 Female, age 85, both hemispheres 62.2
2622 Female, age 67, right hemisphere 62.0
1990 Female, age 91, right hemisphere 61.6
2250 Female, age 67, right hemisphere 60.7
2245 Female, age 91, both hemispheres 60.5
Perirhinal gyrus
nTPM: 62.9
1794 Male, age 80, right hemisphere 65.9
1847 Female, age 91, left hemisphere 65.3
1841 Female, age 85, right hemisphere 63.0
2848 Male, age 76, right hemisphere 61.9
2521 Female, age 94, right hemisphere 58.6
Subiculum
nTPM: 64.2
2042 Male, age 76, both hemispheres 68.5
1901 Male, age 80, both hemispheres 66.7
2619 Male, age 74, both hemispheres 65.0
2438 Female, age 94, left hemisphere 62.3
1977 Female, age 85, both hemispheres 61.7
2729 Female, age 91, right hemisphere 60.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 56.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 56.3
Samples: 197

Max nTPM: 160.5
Min nTPM: 30.5
Std nTPM: 15.1
Median nTPM: 55.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 160.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 124.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 90.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 86.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 85.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 84.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 83.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 81.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 81.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 80.7
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 80.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.3
FF:10153-102I9 76 years, female 26.6
FF:10169-103B7 60 years, female 24.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 29.5
Samples: 4

Max nTPM: 42.6
Min nTPM: 18.1
Sample A Female 42.6
Sample B Female 26.9
Sample C Male 30.2
Sample D Male 18.1
Entorhinal cortex
nTPM: 29.2
Samples: 4

Max nTPM: 33.5
Min nTPM: 20.7
Sample A Female 30.3
Sample B Female 32.1
Sample C Male 33.5
Sample D Male 20.7
Subiculum
nTPM: 24.5
Samples: 4

Max nTPM: 36.1
Min nTPM: 19.7
Sample A Female 36.1
Sample B Female 21.7
Sample C Male 19.7
Sample D Male 20.4
Ventral hippocampus
nTPM: 26.4
Samples: 4

Max nTPM: 31.5
Min nTPM: 19.7
Sample A Female 27.6
Sample B Female 19.7
Sample C Male 31.5
Sample D Male 26.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 47.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 44.1
Samples: 4

Max nTPM: 46.5
Min nTPM: 39.7
Sample A Male 46.5
Sample B Male 44.6
Sample C Female 45.6
Sample D Female 39.7
Hippocampal formation
nTPM: 47.7
Samples: 4

Max nTPM: 51.4
Min nTPM: 42.0
Sample A Male 49.5
Sample B Male 42.0
Sample C Female 47.9
Sample D Female 51.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.9
69262344 Antisense, RP_050303_02_C02, Mouse strain C57BL/6J (56 days, male) 9.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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