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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.8 nTPM
HPA:67.8 nTPM
GTEx:54.2 nTPM
FANTOM5:25.9 Scaled Tags Per Million
Pig:32.4 nTPM
Mouse:45.4 nTPM
Allen mouse:3.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 67.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 63.1
2846 Female, age 79, unknown 65.8
1854 Male, age 80, left hemisphere 64.3
2288 Male, age 75, left hemisphere 63.8
2481 Female, age 94, left hemisphere 62.6
2289 Male, age 61, right hemisphere 62.5
1781 Male, age 74, unknown 62.4
1857 Female, age 85, left hemisphere 62.3
2290 Female, age 72, unknown 60.8
Claustrum
nTPM: 62.5
1956 Male, age 74, unknown 67.2
2568 Male, age 61, both hemispheres 64.1
2196 Female, age 79, unknown 63.0
2392 Female, age 94, both hemispheres 62.3
2198 Male, age 80, both hemispheres 61.7
2292 Female, age 85, both hemispheres 61.7
2645 Female, age 72, unknown 61.2
2284 Female, age 91, both hemispheres 60.6
2491 Male, age 75, both hemispheres 60.2
Globus pallidus, externus
nTPM: 66.0
1996 Male, age 80, right hemisphere 69.7
2772 Female, age 79, unknown 67.1
2395 Male, age 75, both hemispheres 66.3
2567 Female, age 72, unknown 64.1
2646 Male, age 61, right hemisphere 62.8
Globus pallidus, internus
nTPM: 67.8
2111 Female, age 85, right hemisphere 70.7
2287 Male, age 75, right hemisphere 70.5
1818 Male, age 74, unknown 69.1
2037 Male, age 80, right hemisphere 67.6
2778 Female, age 91, both hemispheres 67.6
2566 Female, age 72, unknown 65.9
2483 Female, age 94, right hemisphere 63.4
Nucleus accumbens
nTPM: 63.6
2391 Female, age 94, left hemisphere 65.7
2286 Male, age 75, left hemisphere 64.9
2824 Male, age 61, right hemisphere 63.6
1806 Female, age 85, left hemisphere 63.5
1783 Male, age 74, unknown 63.3
2698 Female, age 72, unknown 62.9
1856 Female, age 91, right hemisphere 62.8
2732 Male, age 80, right hemisphere 62.2
Nucleus basalis of Meynert
nTPM: 64.2
2569 Male, age 61, both hemispheres 69.1
2821 Male, age 75, both hemispheres 62.8
2393 Male, age 80, right hemisphere 62.6
2484 Female, age 94, left hemisphere 62.4
Nucleus of the diagonal band
nTPM: 62.6
1812 Female, age 91, both hemispheres 65.4
2775 Male, age 80, right hemisphere 63.2
2029 Male, age 61, right hemisphere 63.0
2195 Female, age 85, both hemispheres 60.9
1979 Male, age 74, unknown 60.4
Olfactory tubercle
nTPM: 63.2
1846 Male, age 80, right hemisphere 66.0
2856 Male, age 75, right hemisphere 63.5
1998 Female, age 91, both hemispheres 62.7
2487 Female, age 94, left hemisphere 60.6
Putamen
nTPM: 63.8
1838 Male, age 80, right hemisphere 65.2
2647 Male, age 75, left hemisphere 64.2
2489 Female, age 72, unknown 64.0
2482 Female, age 94, left hemisphere 63.8
2466 Female, age 79, unknown 63.5
1937 Female, age 91, right hemisphere 63.1
1829 Male, age 74, unknown 62.6
Septal nuclei
nTPM: 62.6
2629 Female, age 94, right hemisphere 65.0
2031 Female, age 72, unknown 63.7
2394 Male, age 61, left hemisphere 63.0
2199 Male, age 80, right hemisphere 62.5
2009 Female, age 91, both hemispheres 61.9
1960 Male, age 74, unknown 61.0
2059 Female, age 85, both hemispheres 60.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 54.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.2
Samples: 246

Max nTPM: 82.3
Min nTPM: 20.7
Std nTPM: 11.2
Median nTPM: 43.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 82.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 81.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 78.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 76.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 74.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 74.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 73.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 73.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 70.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 70.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 69.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 43.5
Samples: 246

Max nTPM: 87.5
Min nTPM: 22.2
Std nTPM: 11.6
Median nTPM: 41.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 87.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 84.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 78.2
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 73.9
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 72.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 72.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 72.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 71.7
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 69.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 67.9
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 67.9
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Brain - Putamen (basal ganglia)
Average nTPM: 54.2
Samples: 205

Max nTPM: 143.2
Min nTPM: 10.7
Std nTPM: 13.7
Median nTPM: 54.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 143.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 100.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 84.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 81.1
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 80.6
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 78.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 78.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 76.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 76.1
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 75.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 74.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.9
FF:10164-103B2 76 years, female 25.9
Globus pallidus
Scaled Tags Per Million: 23.8
FF:10161-103A8 76 years, female 27.1
FF:10175-103C4 60 years, female 20.5
Nucleus accumbens
Scaled Tags Per Million: 23.7
FF:10037-101F1 23-56 years, mixed 23.7
Putamen
Scaled Tags Per Million: 22.5
FF:10176-103C5 60 years, female 22.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 32.4
Pig sample Sample description nTPM
Caudate
nTPM: 26.0
Samples: 4

Max nTPM: 30.3
Min nTPM: 22.2
Sample A Female 22.2
Sample B Female 28.5
Sample C Male 30.3
Sample D Male 22.8
Putamen
nTPM: 32.4
Samples: 4

Max nTPM: 42.5
Min nTPM: 25.9
Sample A Female 31.7
Sample B Female 25.9
Sample C Male 42.5
Sample D Male 29.4
Septum
nTPM: 24.4
Samples: 4

Max nTPM: 29.1
Min nTPM: 20.7
Sample A Female 29.1
Sample B Female 20.7
Sample C Male 26.5
Sample D Male 21.4
Ventral pallidum
nTPM: 25.0
Samples: 4

Max nTPM: 28.4
Min nTPM: 21.2
Sample A Female 21.2
Sample B Female 27.8
Sample C Male 28.4
Sample D Male 22.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 45.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 45.4
Samples: 4

Max nTPM: 47.7
Min nTPM: 42.4
Sample A Male 47.7
Sample B Male 42.4
Sample C Female 47.7
Sample D Female 43.7
Septum
nTPM: 38.8
Samples: 4

Max nTPM: 41.9
Min nTPM: 35.4
Sample A Male 37.3
Sample B Male 35.4
Sample C Female 41.9
Sample D Female 40.6
Ventral forebrain
nTPM: 43.5
Samples: 4

Max nTPM: 50.0
Min nTPM: 38.2
Sample A Male 50.0
Sample B Male 41.5
Sample C Female 44.1
Sample D Female 38.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.5
69262344 Antisense, RP_050303_02_C02, Mouse strain C57BL/6J (56 days, male) 3.5
Pallidum
Expression energy: 2.1
69262344 Antisense, RP_050303_02_C02, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.