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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.7 nTPM
HPA:38.7 nTPM
GTEx:53.5 nTPM
FANTOM5:38.9 Scaled Tags Per Million
Pig:19.7 nTPM
Mouse:43.4 nTPM
Allen mouse:9.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.2
2481 Female, age 94, left hemisphere 42.0
2288 Male, age 75, left hemisphere 39.4
2846 Female, age 79, unknown 38.5
2289 Male, age 61, right hemisphere 37.6
2290 Female, age 72, unknown 37.4
1857 Female, age 85, left hemisphere 37.3
1781 Male, age 74, unknown 37.0
1854 Male, age 80, left hemisphere 36.6
Claustrum
nTPM: 35.1
2198 Male, age 80, both hemispheres 37.3
2491 Male, age 75, both hemispheres 36.3
1956 Male, age 74, unknown 35.7
2568 Male, age 61, both hemispheres 35.5
2284 Female, age 91, both hemispheres 35.4
2196 Female, age 79, unknown 34.9
2292 Female, age 85, both hemispheres 34.1
2392 Female, age 94, both hemispheres 34.1
2645 Female, age 72, unknown 32.3
Globus pallidus, externus
nTPM: 35.4
2772 Female, age 79, unknown 40.0
2395 Male, age 75, both hemispheres 37.4
1996 Male, age 80, right hemisphere 36.9
2646 Male, age 61, right hemisphere 32.8
2567 Female, age 72, unknown 30.1
Globus pallidus, internus
nTPM: 37.0
2483 Female, age 94, right hemisphere 41.0
2287 Male, age 75, right hemisphere 40.7
2778 Female, age 91, both hemispheres 37.6
1818 Male, age 74, unknown 36.1
2037 Male, age 80, right hemisphere 35.3
2111 Female, age 85, right hemisphere 34.6
2566 Female, age 72, unknown 33.6
Nucleus accumbens
nTPM: 38.7
2824 Male, age 61, right hemisphere 41.0
1856 Female, age 91, right hemisphere 40.8
2286 Male, age 75, left hemisphere 40.3
1783 Male, age 74, unknown 39.3
1806 Female, age 85, left hemisphere 38.7
2698 Female, age 72, unknown 36.9
2391 Female, age 94, left hemisphere 36.7
2732 Male, age 80, right hemisphere 35.8
Nucleus basalis of Meynert
nTPM: 35.6
2484 Female, age 94, left hemisphere 39.0
2393 Male, age 80, right hemisphere 35.4
2821 Male, age 75, both hemispheres 34.9
2569 Male, age 61, both hemispheres 33.0
Nucleus of the diagonal band
nTPM: 38.5
2775 Male, age 80, right hemisphere 39.9
1812 Female, age 91, both hemispheres 39.0
2029 Male, age 61, right hemisphere 38.7
2195 Female, age 85, both hemispheres 37.6
1979 Male, age 74, unknown 37.4
Olfactory tubercle
nTPM: 37.1
1998 Female, age 91, both hemispheres 39.5
1846 Male, age 80, right hemisphere 37.8
2856 Male, age 75, right hemisphere 35.7
2487 Female, age 94, left hemisphere 35.4
Putamen
nTPM: 37.0
2482 Female, age 94, left hemisphere 41.1
2466 Female, age 79, unknown 39.6
1937 Female, age 91, right hemisphere 38.4
1838 Male, age 80, right hemisphere 37.6
1829 Male, age 74, unknown 34.3
2647 Male, age 75, left hemisphere 34.3
2489 Female, age 72, unknown 33.5
Septal nuclei
nTPM: 36.7
1960 Male, age 74, unknown 40.2
2031 Female, age 72, unknown 40.2
2009 Female, age 91, both hemispheres 36.7
2059 Female, age 85, both hemispheres 35.5
2629 Female, age 94, right hemisphere 35.4
2394 Male, age 61, left hemisphere 35.2
2199 Male, age 80, right hemisphere 34.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 53.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 49.4
Samples: 246

Max nTPM: 92.6
Min nTPM: 26.8
Std nTPM: 11.7
Median nTPM: 47.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 92.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 91.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 88.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 86.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 82.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 81.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 81.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 77.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 74.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 74.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 74.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 53.5
Samples: 246

Max nTPM: 87.6
Min nTPM: 29.9
Std nTPM: 11.9
Median nTPM: 53.5
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 87.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 86.2
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 83.4
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 82.4
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 81.7
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 80.5
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 79.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 78.7
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 76.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 75.6
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 75.6
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Brain - Putamen (basal ganglia)
Average nTPM: 52.0
Samples: 205

Max nTPM: 81.4
Min nTPM: 29.1
Std nTPM: 10.6
Median nTPM: 49.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 81.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 79.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 79.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 78.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 78.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 76.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 75.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 73.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 73.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 73.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 72.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 37.0
FF:10164-103B2 76 years, female 37.0
Globus pallidus
Scaled Tags Per Million: 28.9
FF:10175-103C4 60 years, female 29.9
FF:10161-103A8 76 years, female 27.8
Nucleus accumbens
Scaled Tags Per Million: 38.9
FF:10037-101F1 23-56 years, mixed 38.9
Putamen
Scaled Tags Per Million: 37.7
FF:10176-103C5 60 years, female 37.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.7
Pig sample Sample description nTPM
Caudate
nTPM: 18.1
Samples: 4

Max nTPM: 21.5
Min nTPM: 15.6
Sample A Female 15.9
Sample B Female 19.5
Sample C Male 21.5
Sample D Male 15.6
Putamen
nTPM: 19.7
Samples: 4

Max nTPM: 25.4
Min nTPM: 14.7
Sample A Female 20.4
Sample B Female 14.7
Sample C Male 25.4
Sample D Male 18.4
Septum
nTPM: 18.4
Samples: 4

Max nTPM: 20.3
Min nTPM: 17.4
Sample A Female 20.3
Sample B Female 18.2
Sample C Male 17.4
Sample D Male 17.8
Ventral pallidum
nTPM: 17.6
Samples: 4

Max nTPM: 21.7
Min nTPM: 15.2
Sample A Female 15.2
Sample B Female 21.7
Sample C Male 15.3
Sample D Male 18.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 43.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 43.5
Samples: 4

Max nTPM: 45.3
Min nTPM: 39.6
Sample A Male 44.3
Sample B Male 45.3
Sample C Female 39.6
Sample D Female 44.6
Septum
nTPM: 41.7
Samples: 4

Max nTPM: 48.3
Min nTPM: 36.9
Sample A Male 36.9
Sample B Male 48.3
Sample C Female 42.9
Sample D Female 38.7
Ventral forebrain
nTPM: 41.0
Samples: 4

Max nTPM: 46.3
Min nTPM: 36.8
Sample A Male 42.9
Sample B Male 37.9
Sample C Female 46.3
Sample D Female 36.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.7
512518 Antisense, RP_040809_02_A01, Mouse strain C57BL/6J (56 days, male) 19.3
71764879 Antisense, RP_050926_02_A04, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 8.5
512518 Antisense, RP_040809_02_A01, Mouse strain C57BL/6J (56 days, male) 16.9
71764879 Antisense, RP_050926_02_A04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.