ABOUTMENU
HELP
NEWS
IMP3
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.3 nTPM
HPA:38.3 nTPM
GTEx:50.1 nTPM
FANTOM5:30.3 Scaled Tags Per Million
Pig:16.5 nTPM
Mouse:40.1 nTPM
Allen mouse:11.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 38.3
Sample id Sample description nTPM
Hippocampus
nTPM: 36.5
1898 Male, age 80, left hemisphere 39.5
2621 Female, age 67, right hemisphere 36.7
1855 Male, age 76, left hemisphere 36.5
2529 Female, age 94, left hemisphere 36.4
1911 Female, age 85, right hemisphere 35.9
2148 Female, age 91, left hemisphere 34.1
Dentate gyrus
nTPM: 36.4
1927 Female, age 91, both hemispheres 37.7
2010 Male, age 76, both hemispheres 37.7
2528 Male, age 74, both hemispheres 37.2
2530 Female, age 94, left hemisphere 35.9
2531 Female, age 67, both hemispheres 35.4
2246 Female, age 85, both hemispheres 34.5
Entorhinal gyrus
nTPM: 36.0
2764 Male, age 80, right hemisphere 38.7
1938 Female, age 85, left hemisphere 38.0
1787 Male, age 76, left hemisphere 37.0
2117 Female, age 91, right hemisphere 36.6
2613 Female, age 94, left hemisphere 33.6
2686 Male, age 75, right hemisphere 32.2
Hippocampus, CA1
nTPM: 38.3
2749 Male, age 80, left hemisphere 47.6
2527 Male, age 74, both hemispheres 37.6
2082 Female, age 91, right hemisphere 35.7
1873 Female, age 85, both hemispheres 35.4
2045 Male, age 76, both hemispheres 35.2
Hippocampus, CA2
nTPM: 38.1
1963 Male, age 80, left hemisphere 40.7
2249 Male, age 74, both hemispheres 40.7
1892 Male, age 76, both hemispheres 39.9
2113 Female, age 91, right hemisphere 36.4
2437 Female, age 94, left hemisphere 36.4
1940 Female, age 85, left hemisphere 34.7
Hippocampus, CA3
nTPM: 38.2
2137 Male, age 80, left hemisphere 45.2
2436 Male, age 74, both hemispheres 40.7
1867 Male, age 76, both hemispheres 39.6
1891 Female, age 85, both hemispheres 35.4
2620 Female, age 94, left hemisphere 34.5
2861 Female, age 67, both hemispheres 33.6
Parahippocampal cortex
nTPM: 36.0
2250 Female, age 67, right hemisphere 38.2
1990 Female, age 91, right hemisphere 38.1
2018 Male, age 76, both hemispheres 37.7
1850 Male, age 80, both hemispheres 37.1
1933 Female, age 85, both hemispheres 36.4
2532 Female, age 72, left hemisphere 35.8
2245 Female, age 91, both hemispheres 35.5
2692 Male, age 74, both hemispheres 34.0
2693 Female, age 94, both hemispheres 34.0
2622 Female, age 67, right hemisphere 33.1
Perirhinal gyrus
nTPM: 37.6
1794 Male, age 80, right hemisphere 40.3
1847 Female, age 91, left hemisphere 38.7
1841 Female, age 85, right hemisphere 37.9
2521 Female, age 94, right hemisphere 36.5
2848 Male, age 76, right hemisphere 34.6
Subiculum
nTPM: 35.8
1977 Female, age 85, both hemispheres 39.3
1901 Male, age 80, both hemispheres 37.5
2042 Male, age 76, both hemispheres 36.9
2619 Male, age 74, both hemispheres 35.8
2729 Female, age 91, right hemisphere 33.8
2438 Female, age 94, left hemisphere 31.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 50.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 50.1
Samples: 197

Max nTPM: 116.0
Min nTPM: 21.4
Std nTPM: 15.3
Median nTPM: 47.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 116.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 104.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 101.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 99.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 95.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 91.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 91.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 89.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 82.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 79.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 78.7
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 30.3
FF:10153-102I9 76 years, female 32.4
FF:10169-103B7 60 years, female 28.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 16.5
Samples: 4

Max nTPM: 22.2
Min nTPM: 12.5
Sample A Female 22.2
Sample B Female 16.1
Sample C Male 15.2
Sample D Male 12.5
Entorhinal cortex
nTPM: 11.3
Samples: 4

Max nTPM: 12.8
Min nTPM: 8.7
Sample A Female 12.2
Sample B Female 12.8
Sample C Male 11.6
Sample D Male 8.7
Subiculum
nTPM: 11.9
Samples: 4

Max nTPM: 16.6
Min nTPM: 9.3
Sample A Female 16.6
Sample B Female 10.5
Sample C Male 11.1
Sample D Male 9.3
Ventral hippocampus
nTPM: 14.2
Samples: 4

Max nTPM: 17.1
Min nTPM: 8.9
Sample A Female 14.9
Sample B Female 8.9
Sample C Male 17.1
Sample D Male 15.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 40.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 36.2
Samples: 4

Max nTPM: 39.2
Min nTPM: 32.1
Sample A Male 35.9
Sample B Male 37.7
Sample C Female 39.2
Sample D Female 32.1
Hippocampal formation
nTPM: 40.1
Samples: 4

Max nTPM: 41.9
Min nTPM: 38.0
Sample A Male 41.9
Sample B Male 38.0
Sample C Female 41.0
Sample D Female 39.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.5
512518 Antisense, RP_040809_02_A01, Mouse strain C57BL/6J (56 days, male) 22.7
71764879 Antisense, RP_050926_02_A04, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.